5OW4 | pdb_00005ow4

Crystal structure of a protease-resistant fragment of the Trypanosoma cruzi gamete fusion protein HAP2 ectodomain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 
    0.260 (Depositor), 0.271 (DCC) 
  • R-Value Work: 
    0.233 (Depositor), 0.248 (DCC) 
  • R-Value Observed: 
    0.234 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Evolutionary diversification of the HAP2 membrane insertion motifs to drive gamete fusion across eukaryotes.

Fedry, J.Forcina, J.Legrand, P.Pehau-Arnaudet, G.Haouz, A.Johnson, M.Rey, F.A.Krey, T.

(2018) PLoS Biol 16: e2006357-e2006357

  • DOI: https://doi.org/10.1371/journal.pbio.2006357
  • Primary Citation Related Structures: 
    5OW3, 5OW4

  • PubMed Abstract: 

    HAPLESS2 (HAP2) is a broadly conserved, gamete-expressed transmembrane protein that was shown recently to be structurally homologous to viral class II fusion proteins, which initiate fusion with host cells via insertion of fusion loops into the host membrane. However, the functional conformation of the HAP2 fusion loops has remained unknown, as the reported X-ray structure of Chlamydomonas reinhardtii HAP2 lacked this critical region. Here, we report a structure-guided alignment that reveals diversification of the proposed HAP2 fusion loops. Representative crystal structures show that in flowering plants, HAP2 has a single prominent fusion loop projecting an amphipathic helix at its apex, while in trypanosomes, three small nonpolar loops of HAP2 are poised to interact with the target membrane. A detailed structure-function analysis of the Arabidopsis HAP2 amphipathic fusion helix defines key residues that are essential for membrane insertion and for gamete fusion. Our study suggests that HAP2 may have evolved multiple modes of membrane insertion to accommodate the diversity of membrane environments it has encountered during eukaryotic evolution.


  • Organizational Affiliation
    • Unité de Virologie Structurale, Institut Pasteur, Paris, France.

Macromolecule Content 

  • Total Structure Weight: 64.55 kDa 
  • Atom Count: 1,857 
  • Modeled Residue Count: 237 
  • Deposited Residue Count: 591 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Uncharacterized protein591Trypanosoma cruzi strain CL BrenerMutation(s): 0 
Gene Names: Tc00.1047053509105.4
UniProt
Find proteins for Q4DKJ2 (Trypanosoma cruzi (strain CL Brener))
Explore Q4DKJ2 
Go to UniProtKB:  Q4DKJ2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4DKJ2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free:  0.260 (Depositor), 0.271 (DCC) 
  • R-Value Work:  0.233 (Depositor), 0.248 (DCC) 
  • R-Value Observed: 0.234 (Depositor) 
Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 150.09α = 90
b = 150.09β = 90
c = 123.78γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilFrance340371 (CelCelFus)

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Refinement description
  • Version 1.2: 2024-11-13
    Changes: Structure summary