5NNX | pdb_00005nnx

TEAD1 bound to DNA

• PDB DOI: https://doi.org/10.2210/pdb5NNX/pdb
• NAKB: 5NNX

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-04-10 Released: 2017-04-26 
• Deposition Author(s): Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.29 Å
• R-Value Free: 
  0.278 (Depositor), 0.277 (DCC) 
• R-Value Work: 
  0.196 (Depositor), 0.204 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Starting Model: experimental

Literature

TEAD1 bound to DNA

Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 19.62 kDa 
• Atom Count: 1,396 
• Modeled Residue Count: 110 
• Deposited Residue Count: 110 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-1	C [auth A]	74	Homo sapiens	Mutation(s): 0  Gene Names: TEAD1, TCF13, TEF1
UniProt & NIH Common Fund Data Resources
Find proteins for P28347 (Homo sapiens) Explore P28347  Go to UniProtKB:  P28347
PHAROS:  P28347 GTEx:  ENSG00000187079

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA	A [auth C]	18	Homo sapiens

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA	B [auth F]	18	Homo sapiens

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.29 Å
• R-Value Free:  0.278 (Depositor), 0.277 (DCC) 
• R-Value Work:  0.196 (Depositor), 0.204 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 112.3	α = 90
b = 112.3	β = 90
c = 157.562	γ = 120

Software Package:

Software Name	Purpose
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-04-26 
Deposition Author(s): Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

Revision History  

• Version 1.0: 2017-04-26
  Type: Initial release
  
• Version 1.1: 2019-05-08
  Changes: Data collection, Experimental preparation
• Version 1.2: 2024-01-17
  Changes: Data collection, Database references, Refinement description