5NHS

The crystal structure of Xanthomonas albilineans N5, N10-methylenetetrahydrofolate dehydrogenase-cyclohydrolase (FolD)

• PDB DOI: https://doi.org/10.2210/pdb5NHS/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Xanthomonas albilineans GPE PC73
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-03-22 Released: 2018-05-16 
• Deposition Author(s): Bueno, R.V., Guido, R.V.C., Maluf, F.V., Lima, G.M.A., Oliveira, A.A.
• Funding Organization(s): Sao Paulo Research Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 0.241 
• R-Value Work: 0.191 
• R-Value Observed: 0.194 

Starting Model: experimental

Literature

The crystal structure of Xanthomonas albilineans N5, N10-methylenetetrahydrofolate dehydrogenase-cyclohydrolase (FolD)

Bueno, R.V., Guido, R.V.C., Maluf, F.V., Lima, G.M.A., Oliveira, A.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 62.98 kDa 
• Atom Count: 4,445 
• Modelled Residue Count: 561 
• Deposited Residue Count: 592 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional protein FolD	A, B	296	Xanthomonas albilineans GPE PC73	Mutation(s): 0  Gene Names: folD, XALc_1581 EC: 3.5.4.9 (PDB Primary Data), 1.5.1.5 (PDB Primary Data)
UniProt
Find proteins for D2UAL4 (Xanthomonas albilineans (strain GPE PC73 / CFBP 7063)) Explore D2UAL4  Go to UniProtKB:  D2UAL4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	C [auth B]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSO	A, B	L-PEPTIDE LINKING	C3 H7 N O3 S		CYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 0.241 
• R-Value Work: 0.191 
• R-Value Observed: 0.194 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 123.295	α = 90
b = 76.404	β = 90
c = 66.641	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-05-16 
Deposition Author(s): Bueno, R.V., Guido, R.V.C., Maluf, F.V., Lima, G.M.A., Oliveira, A.A.

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation	Brazil	2013/04737-8
Sao Paulo Research Foundation	Brazil	2016/16038-5
Sao Paulo Research Foundation	Brazil	11/08042-9

Revision History  

• Version 1.0: 2018-05-16
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-10-23
  Changes: Structure summary