5NH2 | pdb_00005nh2

Bartonella henselae BepA Fic domain in complex with its antitoxin homologue BiaA

• PDB DOI: https://doi.org/10.2210/pdb5NH2/pdb

• Classification: TRANSFERASE
• Organism(s): Bartonella henselae str. Houston-1
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2017-03-21 Released: 2018-05-16 
• Deposition Author(s): Dietz, N., Schirmer, T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.32 Å
• R-Value Free: 
  0.262 (Depositor), 0.264 (DCC) 
• R-Value Work: 
  0.179 (Depositor), 0.183 (DCC) 
• R-Value Observed: 
  0.187 (Depositor) 

Starting Model: experimental

Literature

Bartonella henselae BepA Fic domain in complex with its antitoxin homologue BiaA

Dietz, N., Schirmer, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 42.11 kDa 
• Atom Count: 2,862 
• Modeled Residue Count: 345 
• Deposited Residue Count: 370 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenosine monophosphate-protein transferase	A	301	Bartonella henselae str. Houston-1	Mutation(s): 0  Gene Names: bepA, BH13370 EC: 2.7.7 (PDB Primary Data), 2.7.7.108 (UniProt)
UniProt
Find proteins for Q6G2A9 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)) Explore Q6G2A9  Go to UniProtKB:  Q6G2A9

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	B	69	Bartonella henselae str. Houston-1	Mutation(s): 0  Gene Names: BH13360
UniProt
Find proteins for A0A0H3LZG7 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)) Explore A0A0H3LZG7  Go to UniProtKB:  A0A0H3LZG7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.32 Å
• R-Value Free:  0.262 (Depositor), 0.264 (DCC) 
• R-Value Work:  0.179 (Depositor), 0.183 (DCC) 
• R-Value Observed: 0.187 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.034	α = 90
b = 56.152	β = 90
c = 136.599	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-05-16 
Deposition Author(s): Dietz, N., Schirmer, T.

Revision History  

• Version 1.0: 2018-05-16
  Type: Initial release
  
• Version 1.1: 2019-10-16
  Changes: Data collection
• Version 1.2: 2024-01-17
  Changes: Advisory, Data collection, Database references, Refinement description