Download MendeleyCrystal structure of 2-methylcitrate dehydratase (MmgE) from Bacillus subtilis.
Baker, G.E., Race, P.R.To be published.
5MUX
Crystal structure of 2-methylcitrate dehydratase (MmgE) from Bacillus subtilis.
- PDB DOI: https://doi.org/10.2210/pdb5MUX/pdb
- Classification: LYASE
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-01-14 Released: 2018-02-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.189
- R-Value Work: 0.151
- R-Value Observed: 0.153
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-methylcitrate dehydratase | 472 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 Gene Names: prpD, mmgE, yqiP, BSU24130 EC: 4.2.1.79 (PDB Primary Data), 4.2.1.3 (PDB Primary Data), 4.2.1 (UniProt) |  | |
UniProt | |||||
Find proteins for P45859 (Bacillus subtilis (strain 168)) Explore P45859 Go to UniProtKB: P45859 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P45859 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA Query on TLA | G [auth A] H [auth B] I [auth C] J [auth D] K [auth E] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.189
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.831 | α = 90 |
| b = 194.409 | β = 92.74 |
| c = 90.869 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-02-14 Deposition Author(s): Baker, G.E., Race, P.R.
Revision History (Full details and data files)
- Version 1.0: 2018-02-14
Type: Initial release - Version 1.1: 2019-10-16
Changes: Data collection - Version 1.2: 2024-05-08
Changes: Data collection, Database references, Refinement description
