5MR9 | pdb_00005mr9

Ligand-receptor complex.

PDB DOI: https://doi.org/10.2210/pdb5MR9/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-21 Released: 2018-01-17
Deposition Author(s): Sandmark, J., Oster, L., Aagaard, A., Roth, R.G., Dahl, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.288 (Depositor), 0.294 (DCC)
R-Value Work:
0.248 (Depositor), 0.249 (DCC)
R-Value Observed:
0.250 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5MR9

This is version 1.2 of the entry. See complete history.

Literature

Structure and biophysical characterisation of the human complex - a role for heparan sulfate

Sandmark, J., Dahl, G., Oster, L., Xu, B., Johansson, P., Akerud, T., Aagaard, A., Davidsson, P., Sorhede-Winzell, M., Rainey, G.J., Roth, R.G.

To be published.

Macromolecule Content

Total Structure Weight: 23.41 kDa
Atom Count: 1,661
Modeled Residue Count: 200
Deposited Residue Count: 204
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Neurturin	A, B	102	Homo sapiens	Mutation(s): 0 Gene Names: NRTN
UniProt & NIH Common Fund Data Resources
Find proteins for Q99748 (Homo sapiens) Explore Q99748 Go to UniProtKB: Q99748
PHAROS: Q99748 GTEx: ENSG00000171119
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q99748
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.288 (Depositor), 0.294 (DCC)
R-Value Work: 0.248 (Depositor), 0.249 (DCC)
R-Value Observed: 0.250 (Depositor)

Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.08	α = 90
b = 32.75	β = 107.06
c = 61.91	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-01-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-01-17
Type: Initial release
Version 1.1: 2019-10-16
Changes: Data collection
Version 1.2: 2024-11-13
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.