5MPO | pdb_00005mpo

Crystal structure of human molybdopterin synthase complex

PDB DOI: https://doi.org/10.2210/pdb5MPO/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2016-12-16 Released: 2016-12-28
Deposition Author(s): Kopec, J., Bailey, H., Fitzpatrick, F., Strain-Damerell, C., Oberholzer, A.E., Williams, E., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.43 Å
R-Value Free:
0.259 (Depositor), 0.260 (DCC)
R-Value Work:
0.205 (Depositor), 0.214 (DCC)
R-Value Observed:
0.207 (Depositor)

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of human molybdopterin synthase complex

Kopec, J., Bailey, H., Fitzpatrick, F., Strain-Damerell, C., Oberholzer, A.E., Williams, E., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

To be published.

Macromolecule Content

Total Structure Weight: 58.18 kDa
Atom Count: 3,224
Modeled Residue Count: 430
Deposited Residue Count: 520
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdopterin synthase sulfur carrier subunit	A, B	106	Homo sapiens	Mutation(s): 0 Gene Names: MOCS2, MOCO1
UniProt & NIH Common Fund Data Resources
Find proteins for O96033 (Homo sapiens) Explore O96033 Go to UniProtKB: O96033
PHAROS: O96033 GTEx: ENSG00000164172
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O96033
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdopterin synthase catalytic subunit	C, D	154	Homo sapiens	Mutation(s): 0 Gene Names: MOCS2, MCBPE, MOCO1 EC: 2.8.1.12
UniProt & NIH Common Fund Data Resources
Find proteins for O96007 (Homo sapiens) Explore O96007 Go to UniProtKB: O96007
PHAROS: O96007 GTEx: ENSG00000164172
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O96007
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.43 Å
R-Value Free: 0.259 (Depositor), 0.260 (DCC)
R-Value Work: 0.205 (Depositor), 0.214 (DCC)
R-Value Observed: 0.207 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 123.72	α = 90
b = 123.72	β = 90
c = 82.49	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-12-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-28
Type: Initial release
Version 1.1: 2019-02-20
Changes: Advisory, Data collection, Derived calculations
Version 1.2: 2019-07-10
Changes: Data collection
Version 1.3: 2024-01-17
Changes: Data collection, Database references, Refinement description