5MN0 | pdb_00005mn0

ABA RECEPTOR FROM CITRUS, CSPYL1

PDB DOI: https://doi.org/10.2210/pdb5MN0/pdb

Classification: SIGNALING PROTEIN
Organism(s): Citrus sinensis, Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-12 Released: 2017-08-02
Deposition Author(s): Moreno-Alvero, M., Yunta, C., Gonzalez-Guzman, M., Arbona, V., Granell, A., Martinez-Ripoll, M., Infantes, L., Rodriguez, P.L., Albert, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.246 (Depositor), 0.230 (DCC)
R-Value Work:
0.206 (Depositor)
R-Value Observed:
0.208 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Structure of Ligand-Bound Intermediates of Crop ABA Receptors Highlights PP2C as Necessary ABA Co-receptor.

Moreno-Alvero, M., Yunta, C., Gonzalez-Guzman, M., Lozano-Juste, J., Benavente, J.L., Arbona, V., Menendez, M., Martinez-Ripoll, M., Infantes, L., Gomez-Cadenas, A., Rodriguez, P.L., Albert, A.

(2017) Mol Plant 10: 1250-1253

PubMed: 28736053 Search on PubMed
DOI: https://doi.org/10.1016/j.molp.2017.07.004
Primary Citation Related Structures:
5MMQ, 5MMX, 5MN0, 5MOA, 5MOB

Organizational Affiliation

Instituto de Química Física Rocasolano, Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain.

Macromolecule Content

Total Structure Weight: 61.06 kDa
Atom Count: 3,911
Modeled Residue Count: 482
Deposited Residue Count: 542
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CSPYL1	A	209	Citrus sinensis	Mutation(s): 0 Gene Names: CISIN_1g046151mg
UniProt
Find proteins for A0A067E666 (Citrus sinensis) Explore A0A067E666 Go to UniProtKB: A0A067E666
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A067E666
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein phosphatase 2C 16	B	333	Arabidopsis thaliana	Mutation(s): 0 Gene Names: HAB1, P2C-HA, At1g72770, F28P22.4 EC: 3.1.3.16
UniProt
Find proteins for Q9CAJ0 (Arabidopsis thaliana) Explore Q9CAJ0 Go to UniProtKB: Q9CAJ0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CAJ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A8S Query on A8S Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid C₁₅ H₂₀ O₄ JLIDBLDQVAYHNE-YKALOCIXSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain D [auth B] MOL2 format, chain D [auth B] mmCIF format, chain D [auth B]	D [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Interactions & Density Focus chain D [auth B]
MN Query on MN Download:Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain F [auth B] SDF format, chain E [auth B] MOL2 format, chain G [auth B] MOL2 format, chain F [auth B] MOL2 format, chain E [auth B] mmCIF format, chain G [auth B] mmCIF format, chain F [auth B] mmCIF format, chain E [auth B]	E [auth B], F [auth B], G [auth B]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B] Interactions & Density Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain L [auth B] SDF format, chain K [auth B] SDF format, chain J [auth B] SDF format, chain I [auth B] SDF format, chain H [auth B] MOL2 format, chain M [auth B] MOL2 format, chain L [auth B] MOL2 format, chain K [auth B] MOL2 format, chain J [auth B] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] mmCIF format, chain M [auth B] mmCIF format, chain L [auth B] mmCIF format, chain K [auth B] mmCIF format, chain J [auth B] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B]	H [auth B] I [auth B] J [auth B] K [auth B] L [auth B] H [auth B], I [auth B], J [auth B], K [auth B], L [auth B], M [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Interactions & Density Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.246 (Depositor), 0.230 (DCC)
R-Value Work: 0.206 (Depositor)
R-Value Observed: 0.208 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.778	α = 90
b = 62.679	β = 90
c = 187.917	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2017-08-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-08-02
Type: Initial release
Version 1.1: 2017-09-20
Changes: Database references
Version 1.2: 2024-05-08
Changes: Data collection, Database references, Derived calculations, Structure summary