Crystal structure of SmAP (LSm) protein from Methanococcus vannielii in complex with URIDINE-5'-MONOPHOSPHATE
Nikulin, A.D., Lekontseva, N.V., Tishchenko, S.V., Kravchenko, O.V.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Like-Sm ribonucleoprotein core | 72 | Methanococcus vannielii | Mutation(s): 0  Gene Names: Mevan_0470 | ||
UniProt | |||||
Find proteins for A6UPF5 (Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)) Explore A6UPF5  Go to UniProtKB:  A6UPF5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6UPF5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
U5P Query on U5P | AB [auth R] BB [auth T] CA [auth A] CB [auth U] DA [auth B] | URIDINE-5'-MONOPHOSPHATE C9 H13 N2 O9 P DJJCXFVJDGTHFX-XVFCMESISA-N | |||
PG4 Query on PG4 | EA [auth B] GB [auth W] HA [auth D] JA [auth E] KB [auth Z] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 91.015 | α = 90 |
b = 97.869 | β = 103.88 |
c = 123.448 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Russian Scientific Foundation | Russian Federation | 14-14-00496 |