5MFY | pdb_00005mfy

RBM5 OCRE domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structural basis for the recognition of spliceosomal SmN/B/B' proteins by the RBM5 OCRE domain in splicing regulation.

Mourao, A.Bonnal, S.Soni, K.Warner, L.Bordonne, R.Valcarcel, J.Sattler, M.

(2016) Elife 5

  • DOI: https://doi.org/10.7554/eLife.14707
  • Primary Citation Related Structures: 
    5MF9, 5MFY

  • PubMed Abstract: 

    The multi-domain splicing factor RBM5 regulates the balance between antagonistic isoforms of the apoptosis-control genes FAS/CD95 , Caspase-2 and AID . An OCRE (OCtamer REpeat of aromatic residues) domain found in RBM5 is important for alternative splicing regulation and mediates interactions with components of the U4/U6.U5 tri-snRNP. We show that the RBM5 OCRE domain adopts a unique β-sheet fold. NMR and biochemical experiments demonstrate that the OCRE domain directly binds to the proline-rich C-terminal tail of the essential snRNP core proteins SmN/B/B'. The NMR structure of an OCRE-SmN peptide complex reveals a specific recognition of poly-proline helical motifs in SmN/B/B'. Mutation of conserved aromatic residues impairs binding to the Sm proteins in vitro and compromises RBM5-mediated alternative splicing regulation of FAS/CD95. Thus, RBM5 OCRE represents a poly-proline recognition domain that mediates critical interactions with the C-terminal tail of the spliceosomal SmN/B/B' proteins in FAS/CD95 alternative splicing regulation.


  • Organizational Affiliation
    • Institute of Structural Biology, Helmholtz Zentrum München, Neuherberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 7.44 kDa 
  • Atom Count: 528 
  • Modeled Residue Count: 64 
  • Deposited Residue Count: 64 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RNA-binding protein 564Homo sapiensMutation(s): 0 
Gene Names: RBM5H37LUCA15
UniProt & NIH Common Fund Data Resources
Find proteins for P52756 (Homo sapiens)
Explore P52756 
Go to UniProtKB:  P52756
PHAROS:  P52756
GTEx:  ENSG00000003756 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP52756
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2016-12-07
    Type: Initial release
  • Version 1.1: 2019-05-08
    Changes: Data collection
  • Version 1.2: 2024-06-19
    Changes: Data collection, Database references