5MF3 | pdb_00005mf3

NMR solution structure of Harzianin HK-VI in SDS micelles

PDB DOI: https://doi.org/10.2210/pdb5MF3/pdb
BMRB: 34065

Classification: ANTIBIOTIC
Organism(s): Trichoderma pseudokoningii
Mutation(s): No

Deposited: 2016-11-17 Released: 2018-06-13
Deposition Author(s): Kara, S., Zamora-Carreras, H., Afonin, S., Grage, S.L., Ulrich, A.S., Jimenez, M.A.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 5MF3

This is version 2.0 of the entry. See complete history.

Literature

11-mer peptaibol Harzianin HK-VI: conformational and biological analysis

Kara, S., Afonin, S., Zamora-Carreras, H., Bordessa, A., Doan, V., Takeshita, N., Grage, S.L., Chaume, G., Jimenez, M.A., Fischer, R., Bruix, M., Brigaud, T., Ulrich, A.S.

To be published.

Macromolecule Content

Total Structure Weight: 1.16 kDa
Atom Count: 83
Modeled Residue Count: 12
Deposited Residue Count: 12
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Harzianin HK-VI	A	12	Trichoderma pseudokoningii	Mutation(s): 0
UniProt
Find proteins for A0A3B6UE78 (Trichoderma pseudokoningii) Explore A0A3B6UE78 Go to UniProtKB: A0A3B6UE78
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A3B6UE78
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
AIB Query on AIB	A	L-PEPTIDE LINKING	C₄ H₉ N O₂		ALA
DCL Query on DCL	A	PEPTIDE-LIKE	C₆ H₁₅ N O		--

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2018-06-13

Deposition Author(s):

Zamora-Carreras, H.

Revision History (Full details and data files)

Version 1.0: 2018-06-13
Type: Initial release
Version 1.1: 2019-05-08
Changes: Data collection
Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.