5M38 | pdb_00005m38

Structure of the TagL peptidoglycan binding domain from EAEC T6SS

PDB DOI: https://doi.org/10.2210/pdb5M38/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2016-10-14 Released: 2018-02-21
Deposition Author(s): Cambillau, C., Nguyen, V.S., Spinelli, S., Cascales, E.
Funding Organization(s): French National Research Agency

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.232 (Depositor), 0.251 (DCC)
R-Value Work:
0.217 (Depositor), 0.232 (DCC)
R-Value Observed:
0.218 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of the TagL peptidoglycan binding domain from EAEC T6SS

Cambillau, C., Nguyen, V.S., Cascales, E.

To be published.

Macromolecule Content

Total Structure Weight: 45.28 kDa
Atom Count: 2,633
Modeled Residue Count: 339
Deposited Residue Count: 417
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
OmpA family protein	A, B, C	139	Escherichia coli	Mutation(s): 0 Gene Names: ACU81_04615
UniProt
Find proteins for D3GUV9 (Escherichia coli O44:H18 (strain 042 / EAEC)) Explore D3GUV9 Go to UniProtKB: D3GUV9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D3GUV9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.232 (Depositor), 0.251 (DCC)
R-Value Work: 0.217 (Depositor), 0.232 (DCC)
R-Value Observed: 0.218 (Depositor)

Space Group: I 4₁ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 211.55	α = 90
b = 211.55	β = 90
c = 211.55	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-02-21

Deposition Author(s):

Funding Organization	Location	Grant Number
French National Research Agency	France	ANR- 14-CE14-0006-01

Revision History (Full details and data files)

Version 1.0: 2018-02-21
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.