5LFL | pdb_00005lfl

MamA RS-1 ArsTM double mutant

PDB DOI: https://doi.org/10.2210/pdb5LFL/pdb

Classification: PROTEIN BINDING
Organism(s): Solidesulfovibrio magneticus RS-1
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2016-07-03 Released: 2017-08-02
Deposition Author(s): Zarivach, R., Cronin, S.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.37 Å
R-Value Free:
0.214 (Depositor), 0.221 (DCC)
R-Value Work:
0.196 (Depositor), 0.202 (DCC)
R-Value Observed:
0.197 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Differing self-assembling protein nanostructures in soluble and crystal form reveal dynamic behaviour

Cronin, S.L., Navon, Y., Zarivach, R., Bitton, R.

To be published.

Macromolecule Content

Total Structure Weight: 139.69 kDa
Atom Count: 8,547
Modeled Residue Count: 1,058
Deposited Residue Count: 1,212
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Magnetosome protein MamA	A, B, C, D, E A, B, C, D, E, F	202	Solidesulfovibrio magneticus RS-1	Mutation(s): 0 Gene Names: mamA, DMR_41160
UniProt
Find proteins for C4XPQ7 (Solidesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)) Explore C4XPQ7 Go to UniProtKB: C4XPQ7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C4XPQ7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain L [auth E] SDF format, chain K [auth D] SDF format, chain J [auth C] SDF format, chain I [auth C] SDF format, chain H [auth B] SDF format, chain G [auth A] MOL2 format, chain L [auth E] MOL2 format, chain K [auth D] MOL2 format, chain J [auth C] MOL2 format, chain I [auth C] MOL2 format, chain H [auth B] MOL2 format, chain G [auth A] mmCIF format, chain L [auth E] mmCIF format, chain K [auth D] mmCIF format, chain J [auth C] mmCIF format, chain I [auth C] mmCIF format, chain H [auth B] mmCIF format, chain G [auth A]	G [auth A] H [auth B] I [auth C] J [auth C] K [auth D] G [auth A], H [auth B], I [auth C], J [auth C], K [auth D], L [auth E]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth E] Interactions & Density Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.37 Å
R-Value Free: 0.214 (Depositor), 0.221 (DCC)
R-Value Work: 0.196 (Depositor), 0.202 (DCC)
R-Value Observed: 0.197 (Depositor)

Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 150.548	α = 90
b = 150.548	β = 90
c = 204.297	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
BALBES	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-08-02

Deposition Author(s):

Zarivach, R.

Cronin, S.L.

Revision History (Full details and data files)

Version 1.0: 2017-08-02
Type: Initial release
Version 1.1: 2019-10-16
Changes: Data collection
Version 1.2: 2024-05-08
Changes: Data collection, Database references, Refinement description

5LFL | pdb_00005lfl

MamA RS-1 ArsTM double mutant

Literature

Differing self-assembling protein nanostructures in soluble and crystal form reveal dynamic behaviour

Biological Assembly 1

Biological Assembly 2

Biological Assembly 3

Biological Assembly 4

Biological Assembly 5

Biological Assembly 6

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand