5KVR | pdb_00005kvr

X-Ray Crystal Structure of a Fragment (1-75) of a Transcriptional Regulator PdhR from Escherichia coli CFT073

PDB DOI: https://doi.org/10.2210/pdb5KVR/pdb

Classification: TRANSLATION
Organism(s): Escherichia coli CFT073
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-07-15 Released: 2016-11-02
Deposition Author(s): Brunzelle, J.S., Wawrzak, Z., Sandoval, J., Skarina, T., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free:
0.207 (Depositor), 0.207 (DCC)
R-Value Work:
0.177 (Depositor), 0.180 (DCC)
R-Value Observed:
0.178 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

X-Ray Crystal Structure of a Fragment (1-75) of a Transcriptional Regulator PdhR from Escherichia coli CFT073

Brunzelle, J.S., Wawrzak, Z., Sandoval, J., Skarina, T., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 8.77 kDa
Atom Count: 711
Modeled Residue Count: 77
Deposited Residue Count: 77
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate dehydrogenase complex repressor	A	77	Escherichia coli CFT073	Mutation(s): 0 Gene Names: pdhR, c0140
UniProt
Find proteins for P0ACL9 (Escherichia coli (strain K12)) Explore P0ACL9 Go to UniProtKB: P0ACL9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0ACL9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free: 0.207 (Depositor), 0.207 (DCC)
R-Value Work: 0.177 (Depositor), 0.180 (DCC)
R-Value Observed: 0.178 (Depositor)

Diffraction Data:

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.27	α = 90
b = 45.27	β = 90
c = 59.16	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PDB_EXTRACT	data extraction
BALBES	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-11-02

Deposition Author(s):

Brunzelle, J.S.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2016-11-02
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description