Download MendeleyCrystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain
Shree, S., Ramachandran, R.To be published.
5JLP
Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain
- PDB DOI: https://doi.org/10.2210/pdb5JLP/pdb
- Classification: HYDROLASE
- Organism(s): Mycobacterium avium 104
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2016-04-27 Released: 2017-05-03
- Funding Organization(s): CSIR
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.267
- R-Value Work: 0.191
- R-Value Observed: 0.199
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoserine phosphatase | 396 | Mycobacterium avium 104 | Mutation(s): 1 Gene Names: serB, MAV_3907 EC: 3.1.3.3 |  | |
UniProt | |||||
Find proteins for A0QJI1 (Mycobacterium avium (strain 104)) Explore A0QJI1 Go to UniProtKB: A0QJI1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0QJI1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG0 Query on PG0 | C [auth A] | 2-(2-METHOXYETHOXY)ETHANOL C5 H12 O3 SBASXUCJHJRPEV-UHFFFAOYSA-N |  | ||
| SER Query on SER | E [auth A] | SERINE C3 H7 N O3 MTCFGRXMJLQNBG-REOHCLBHSA-N |  | ||
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.267
- R-Value Work: 0.191
- R-Value Observed: 0.199
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.548 | α = 90 |
| b = 109.535 | β = 90 |
| c = 134.434 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-05-03 Deposition Author(s): Shree, S., Ramachandran, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| CSIR | India | -- |
Revision History (Full details and data files)
- Version 1.0: 2017-05-03
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description
