5J9G | pdb_00005j9g

Structure of Lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21 angstrom resolution

PDB DOI: https://doi.org/10.2210/pdb5J9G/pdb

Classification: OXIDOREDUCTASE
Organism(s): Lactobacillus acidophilus NCFM
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-04-10 Released: 2017-04-19
Deposition Author(s): Patel, D., Pappachan, A., Singh, D.D.
Funding Organization(s): Department of Biotechnology

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free:
0.226 (Depositor), 0.229 (DCC)
R-Value Work:
0.203 (Depositor)
R-Value Observed:
0.204 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of Lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21 angstrom resolution.

Patel, D., Pappachan, A., Singh, D.D.

To be published.

Macromolecule Content

Total Structure Weight: 73.07 kDa
Atom Count: 5,215
Modeled Residue Count: 676
Deposited Residue Count: 676
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyceraldehyde-3-p dehydrogenase	A, B	338	Lactobacillus acidophilus NCFM	Mutation(s): 0 Gene Names: LBA0698 EC: 1.2.1.12
UniProt
Find proteins for Q5FL51 (Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)) Explore Q5FL51 Go to UniProtKB: Q5FL51
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5FL51
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.226 (Depositor), 0.229 (DCC)
R-Value Work: 0.203 (Depositor)
R-Value Observed: 0.204 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 114.99	α = 90
b = 114.99	β = 90
c = 113.3	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-04-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Department of Biotechnology	India	--

Revision History (Full details and data files)

Version 1.0: 2017-04-19
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.