5J3E

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.211 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA

Halabelian, L.Tempel, W.Li, Y.Bountra, C.Edwards, A.M.Arrowsmith, C.H.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thymocyte nuclear protein 1
A, B
225Homo sapiensMutation(s): 0 
Gene Names: THYN1THY28HSPC144MDS012My0054
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P016 (Homo sapiens)
Explore Q9P016 
Go to UniProtKB:  Q9P016
PHAROS:  Q9P016
GTEx:  ENSG00000151500 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P016
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
5-methylcytosine containing DNA
C, D, E, F
12Homo sapiens
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.327α = 90
b = 73.232β = 91.18
c = 108.201γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-20
    Type: Initial release
  • Version 1.1: 2023-09-27
    Changes: Data collection, Database references, Derived calculations, Refinement description