5IWJ | pdb_00005iwj

LAmbda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGGCCCGG

• PDB DOI: https://doi.org/10.2210/pdb5IWJ/pdb
• NAKB: 5IWJ

• Classification: DNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 2016-03-22 Released: 2017-04-05 
• Deposition Author(s): Souter, J.E., Hall, J.P., Cardin, C.J.
• Funding Organization(s): Biotechnology and Biological Sciences Research Council

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 
  0.277 (Depositor), 0.284 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.212 (DCC) 
• R-Value Observed: 
  0.214 (Depositor) 

Literature

The binding specificity of RuTAP2dppz

Souter, J.E., Hall, J.P., Gurung, S.P., Brazier, J.A., Cardin, C.J.

To be published.

Biological Assembly 1  

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 3.93 kDa 
• Atom Count: 284 
• Modeled Residue Count: 10 
• Deposited Residue Count: 10 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3')	A [auth C]	10	synthetic construct

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
RKL	C	Ru(tap)2(dppz) complex C38 H22 N12 Ru PIKVAZQLFXBUSD-UHFFFAOYSA-N
BA	B [auth C]	BARIUM ION Ba XDFCIPNJCBUZJN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free:  0.277 (Depositor), 0.284 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.212 (DCC) 
• R-Value Observed: 0.214 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.783	α = 90
b = 46.783	β = 90
c = 34.948	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
SHELXDE	phasing
xia2	data reduction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-04-05 
Deposition Author(s): Souter, J.E., Hall, J.P., Cardin, C.J.

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Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council	United Kingdom	BB/K019279/1
Biotechnology and Biological Sciences Research Council	United Kingdom	BB/M004635/1

Revision History  

• Version 1.0: 2017-04-05
  Type: Initial release
  
• Version 1.1: 2017-08-30
  Changes: Author supporting evidence
• Version 1.2: 2024-05-08
  Changes: Data collection, Database references, Derived calculations