5I7P

Crystal structure of Fkbp12-IF(SlyD), a chimeric protein of human Fkbp12 and the insert in flap domain of Ecoli SlyD

• PDB DOI: https://doi.org/10.2210/pdb5I7P/pdb

• Classification: ISOMERASE
• Organism(s): Homo sapiens, Escherichia coli
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2016-02-18 Released: 2017-03-08 
• Deposition Author(s): Jakob, R.P., Knappe, T.A., Dobbek, H., Schmid, F.X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.248 
• R-Value Work: 0.219 
• R-Value Observed: 0.221 

Starting Model: experimental

Literature

Structural and Functional Analysis of Chaperone Domain Insertion in Fkbp12

Zoldak, G., Knappe, T.A., Geitner, A.-J., Scholz, C., Dobbek, H., Schmid, F.X., Jakob, R.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 18.11 kDa 
• Atom Count: 1,421 
• Modelled Residue Count: 155 
• Deposited Residue Count: 161 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase FKBP1A,FKBP-type peptidyl-prolyl cis-trans isomerase SlyD,Peptidyl-prolyl cis-trans isomerase FKBP1A	A	161	Homo sapiens, Escherichia coli	Mutation(s): 1  Gene Names: FKBP1A, FKBP1, FKBP12, slyD, b3349, JW3311 EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for P0A9K9 (Escherichia coli (strain K12)) Explore P0A9K9  Go to UniProtKB:  P0A9K9
Find proteins for P62942 (Homo sapiens) Explore P62942  Go to UniProtKB:  P62942
PHAROS:  P62942 GTEx:  ENSG00000088832
UniProt Groups	P62942P0A9K9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.248 
• R-Value Work: 0.219 
• R-Value Observed: 0.221 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.219	α = 90
b = 60.219	β = 90
c = 120.5	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-03-08 
Deposition Author(s): Jakob, R.P., Knappe, T.A., Dobbek, H., Schmid, F.X.

Revision History  

• Version 1.0: 2017-03-08
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description