5I72 | pdb_00005i72

Crystal structure of the oligomeric form of the Lassa virus matrix protein Z


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.209 (Depositor), 0.215 (DCC) 
  • R-Value Work: 
    0.190 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 
    0.191 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 5I72

This is version 1.4 of the entry. See complete history

Literature

Crystal Structure of the Oligomeric Form of Lassa Virus Matrix Protein Z.

Hastie, K.M.Zandonatti, M.Liu, T.Li, S.Woods, V.L.Saphire, E.O.

(2016) J Virol 90: 4556-4562

  • DOI: https://doi.org/10.1128/JVI.02896-15
  • Primary Citation Related Structures: 
    5I72

  • PubMed Abstract: 

    The arenavirus matrix protein Z is highly multifunctional and occurs in both monomeric and oligomeric forms. The crystal structure of a dodecamer of Z from Lassa virus, presented here, illustrates a ring-like structure with a highly basic center. Mutagenesis demonstrates that the dimeric interface within the dodecamer and a Lys-Trp-Lys triad at the center of the ring are important for oligomerization. This structure provides an additional template to explore the many functions of Z. The arenavirus Lassa virus causes hundreds of thousands of infections each year, many of which develop into fatal hemorrhagic fever. The arenavirus matrix protein Z is multifunctional, with at least four distinct roles. Z exists in both monomeric and oligomeric forms, each of which likely serves a specific function in the viral life cycle. Here we present the dodecameric form of Lassa virus Z and demonstrate that Z forms a "wreath" with a highly basic center. This structure and that of monomeric Z now provide a pair of critical templates by which the multiple roles of Z in the viral life cycle may be interpreted.


  • Organizational Affiliation
    • Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, USA.

Macromolecule Content 

  • Total Structure Weight: 12.43 kDa 
  • Atom Count: 826 
  • Modeled Residue Count: 104 
  • Deposited Residue Count: 106 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RING finger protein Z
A, B
53Lassa virus JosiahMutation(s): 0 
UniProt
Find proteins for O73557 (Lassa virus (strain Mouse/Sierra Leone/Josiah/1976))
Explore O73557 
Go to UniProtKB:  O73557
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO73557
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.209 (Depositor), 0.215 (DCC) 
  • R-Value Work:  0.190 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 0.191 (Depositor) 
Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.961α = 90
b = 116.961β = 90
c = 82.544γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction
d*TREKdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI2008031

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2016-05-04
    Changes: Database references
  • Version 1.2: 2017-09-20
    Changes: Author supporting evidence, Database references, Derived calculations
  • Version 1.3: 2022-03-23
    Changes: Author supporting evidence, Database references
  • Version 1.4: 2024-05-22
    Changes: Data collection