5HMO | pdb_00005hmo

myosin X motor activity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.49 Å
  • R-Value Free: 
    0.437 (Depositor), 0.439 (DCC) 
  • R-Value Work: 
    0.391 (Depositor), 0.391 (DCC) 
  • R-Value Observed: 
    0.394 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5HMO

This is version 1.2 of the entry. See complete history

Literature

The myosin X motor is optimized for movement on actin bundles.

Ropars, V.Yang, Z.Isabet, T.Blanc, F.Zhou, K.Lin, T.Liu, X.Hissier, P.Samazan, F.Amigues, B.Yang, E.D.Park, H.Pylypenko, O.Cecchini, M.Sindelar, C.V.Sweeney, H.L.Houdusse, A.

(2016) Nat Commun 7: 12456-12456

  • DOI: https://doi.org/10.1038/ncomms12456
  • Primary Citation Related Structures: 
    5HMO, 5HMP, 5I0H, 5I0I, 5KG8

  • PubMed Abstract: 

    Myosin X has features not found in other myosins. Its structure must underlie its unique ability to generate filopodia, which are essential for neuritogenesis, wound healing, cancer metastasis and some pathogenic infections. By determining high-resolution structures of key components of this motor, and characterizing the in vitro behaviour of the native dimer, we identify the features that explain the myosin X dimer behaviour. Single-molecule studies demonstrate that a native myosin X dimer moves on actin bundles with higher velocities and takes larger steps than on single actin filaments. The largest steps on actin bundles are larger than previously reported for artificially dimerized myosin X constructs or any other myosin. Our model and kinetic data explain why these large steps and high velocities can only occur on bundled filaments. Thus, myosin X functions as an antiparallel dimer in cells with a unique geometry optimized for movement on actin bundles.


  • Organizational Affiliation
    • Structural Motility, Institut Curie, PSL Research University, CNRS, UMR 144, F-75005 Paris, France.

Macromolecule Content 

  • Total Structure Weight: 33.37 kDa 
  • Atom Count: 1,946 
  • Modeled Residue Count: 253 
  • Deposited Residue Count: 268 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Unconventional myosin-XA,
B [auth C]
134Bos taurusMutation(s): 0 
Gene Names: MYO10
UniProt
Find proteins for P79114 (Bos taurus)
Explore P79114 
Go to UniProtKB:  P79114
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP79114
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.49 Å
  • R-Value Free:  0.437 (Depositor), 0.439 (DCC) 
  • R-Value Work:  0.391 (Depositor), 0.391 (DCC) 
  • R-Value Observed: 0.394 (Depositor) 
Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.81α = 90
b = 69.81β = 90
c = 236.69γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-07
    Type: Initial release
  • Version 1.1: 2016-09-14
    Changes: Database references
  • Version 1.2: 2024-01-10
    Changes: Data collection, Database references, Refinement description