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 5HHX | pdb_00005hhx

Inhibiting complex IL-17A and IL-17RA interactions with a linear peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.263 (Depositor), 0.279 (DCC) 
  • R-Value Work: 
    0.176 (Depositor), 0.187 (DCC) 
  • R-Value Observed: 
    0.180 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history. 

Literature

Inhibiting complex IL-17A and IL-17RA interactions with a linear peptide.

Liu, S., Desharnais, J., Sahasrabudhe, P.V., Jin, P., Li, W., Oates, B.D., Shanker, S., Banker, M.E., Chrunyk, B.A., Song, X., Feng, X., Griffor, M., Jimenez, J., Chen, G., Tumelty, D., Bhat, A., Bradshaw, C.W., Woodnutt, G., Lappe, R.W., Thorarensen, A., Qiu, X., Withka, J.M., Wood, L.D.

(2016) Sci Rep 6: 26071-26071

  • DOI: https://doi.org/10.1038/srep26071
  • Primary Citation Related Structures: 
    5HHV, 5HHX

  • PubMed Abstract: 

    IL-17A is a pro-inflammatory cytokine that has been implicated in autoimmune and inflammatory diseases. Monoclonal antibodies inhibiting IL-17A signaling have demonstrated remarkable efficacy, but an oral therapy is still lacking. A high affinity IL-17A peptide antagonist (HAP) of 15 residues was identified through phage-display screening followed by saturation mutagenesis optimization and amino acid substitutions. HAP binds specifically to IL-17A and inhibits the interaction of the cytokine with its receptor, IL-17RA. Tested in primary human cells, HAP blocked the production of multiple inflammatory cytokines. Crystal structure studies revealed that two HAP molecules bind to one IL-17A dimer symmetrically. The N-terminal portions of HAP form a β-strand that inserts between two IL-17A monomers while the C-terminal section forms an α helix that directly blocks IL-17RA from binding to the same region of IL-17A. This mode of inhibition suggests opportunities for developing peptide antagonists against this challenging target.


  • Organizational Affiliation: 
    • Worldwide Research and Development, Pfizer Inc., Eastern Point Road, Groton, CT 06340 USA.

Macromolecule Content 

  • Total Structure Weight: 81.45 kDa 
  • Atom Count: 4,123 
  • Modeled Residue Count: 542 
  • Deposited Residue Count: 743 
  • Unique protein chains: 4

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Interleukin-17A
A, B
138Homo sapiensMutation(s): 0 
Gene Names: IL17A, CTLA8, IL17
UniProt & NIH Common Fund Data Resources
Find proteins for Q16552 (Homo sapiens)
Explore Q16552 
Go to UniProtKB:  Q16552
PHAROS:  Q16552
GTEx:  ENSG00000112115 
Entity Groups
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UniProt GroupQ16552
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
CAT-2000 FAB heavy chainC [auth H]237Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
IL-17A peptide inhibitorD [auth I]16synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
CAT-2000 FAB light chainE [auth L]214Homo sapiensMutation(s): 0 
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.263 (Depositor), 0.279 (DCC) 
  • R-Value Work:  0.176 (Depositor), 0.187 (DCC) 
  • R-Value Observed: 0.180 (Depositor) 
Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.4α = 90
b = 113.4β = 90
c = 86.79γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
autoPROCdata scaling
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

  • Released Date: 2016-06-01 
  • Deposition Author(s): Liu, S.

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-01
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Derived calculations, Refinement description
  • Version 1.2: 2023-09-27
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-09
    Changes: Structure summary