5H4E | pdb_00005h4e

Crystal structure of a beta-1,3-glucanase domain (GH64) from Clostridium beijerinckii

• PDB DOI: https://doi.org/10.2210/pdb5H4E/pdb

• Classification: HYDROLASE
• Organism(s): Clostridium beijerinckii NCIMB 8052
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-10-31 Released: 2017-11-08 
• Deposition Author(s): Srivastava, S.S., Sankaranarayanan, R.
• Funding Organization(s): Council of Scientific and Industrial Research

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.86 Å
• R-Value Free: 
  0.214 (Depositor), 0.214 (DCC) 
• R-Value Work: 
  0.161 (Depositor), 0.163 (DCC) 
• R-Value Observed: 
  0.164 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a beta-1,3-glucanase domain (GH64) from Clostridium beijerinckii

Srivastava, S.S., Sankaranarayanan, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 41.98 kDa 
• Atom Count: 3,429 
• Modeled Residue Count: 375 
• Deposited Residue Count: 375 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
beta 1-3 glucanase	A	375	Clostridium beijerinckii NCIMB 8052	Mutation(s): 0  Gene Names: Cbei_2825
UniProt
Find proteins for A6LX94 (Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)) Explore A6LX94  Go to UniProtKB:  A6LX94

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.86 Å
• R-Value Free:  0.214 (Depositor), 0.214 (DCC) 
• R-Value Work:  0.161 (Depositor), 0.163 (DCC) 
• R-Value Observed: 0.164 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.758	α = 90
b = 72.838	β = 103.85
c = 56.456	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
AUTOMAR	data collection
HKL-2000	data scaling
PHENIX	phasing
PHENIX	refinement
HKL-2000	data reduction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-11-08 
Deposition Author(s): Srivastava, S.S., Sankaranarayanan, R.

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Funding Organization	Location	Grant Number
Council of Scientific and Industrial Research	India	--

Revision History  

• Version 1.0: 2017-11-08
  Type: Initial release
  
• Version 2.0: 2017-11-15
  Changes: Advisory, Atomic model, Database references, Derived calculations, Experimental preparation, Polymer sequence, Source and taxonomy, Structure summary
• Version 2.1: 2018-02-07
  Changes: Database references, Source and taxonomy
• Version 2.2: 2023-11-08
  Changes: Data collection, Database references, Refinement description