5H2S | pdb_00005h2s

Solution structure of Tilapia Piscidin 4 (TP4) from Oreochromis niloticus

PDB DOI: https://doi.org/10.2210/pdb5H2S/pdb
BMRB: 36025

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Oreochromis niloticus
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2016-10-17 Released: 2017-10-25
Deposition Author(s): Wei, S., Chen, C.
Funding Organization(s): Academia Sinica and Ministry of Science and Technology, Ministry of Science and Technology

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Solution structure of Tilapia piscidin 4, an antimicrobial peptide effective against multidrug resistant Helicobacter pylori

Wei, S., Liao, Y., Chen, C.

To be published.

Macromolecule Content

Total Structure Weight: 2.99 kDa
Atom Count: 212
Modeled Residue Count: 25
Deposited Residue Count: 25
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Piscidin-4	A	25	Oreochromis niloticus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for L0CKG3 (Oreochromis niloticus) Explore L0CKG3 Go to UniProtKB: L0CKG3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	L0CKG3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-10-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Academia Sinica and Ministry of Science and Technology	Taiwan	104-0210-01-09-02
Ministry of Science and Technology	Taiwan	MOST 103-2311-B-001-026-MY3

Revision History (Full details and data files)

Version 1.0: 2017-10-25
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.