5H10 | pdb_00005h10

TRAF1-TANk complex

PDB DOI: https://doi.org/10.2210/pdb5H10/pdb

Classification: SIGNALING PROTEIN/INHIBITOR
Organism(s): Homo sapiens, Peptide display vector fth1
Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
Mutation(s): No

Deposited: 2016-10-07 Released: 2017-10-11
Deposition Author(s): Kim, C.M., Park, H.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.21 Å
R-Value Free:
0.270 (Depositor), 0.269 (DCC)
R-Value Work:
0.218 (Depositor), 0.218 (DCC)
R-Value Observed:
0.224 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5H10

This is version 1.1 of the entry. See complete history.

Literature

TRAF1-TANk complex

Kim, C.M., Park, H.H.

To be published.

Macromolecule Content

Total Structure Weight: 73.74 kDa
Atom Count: 4,808
Modeled Residue Count: 598
Deposited Residue Count: 639
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TNF receptor-associated factor 1	A, B, C	205	Homo sapiens	Mutation(s): 0 Gene Names: TRAF1, EBI6
UniProt & NIH Common Fund Data Resources
Find proteins for Q13077 (Homo sapiens) Explore Q13077 Go to UniProtKB: Q13077
PHAROS: Q13077 GTEx: ENSG00000056558
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q13077
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TRAF family member-associated NF-kappaB activator	D, E, F	8	Peptide display vector fth1	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q92844 (Homo sapiens) Explore Q92844 Go to UniProtKB: Q92844
PHAROS: Q92844 GTEx: ENSG00000136560
Entity Groups
UniProt Group	Q92844
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.21 Å
R-Value Free: 0.270 (Depositor), 0.269 (DCC)
R-Value Work: 0.218 (Depositor), 0.218 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.21	α = 90
b = 79.034	β = 90
c = 113.38	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-10-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-10-11
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.