5GXJ | pdb_00005gxj

Zika Virus NS2B-NS3 protease

PDB DOI: https://doi.org/10.2210/pdb5GXJ/pdb

Classification: HYDROLASE
Organism(s): Zika virus, synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-09-18 Released: 2017-05-03
Deposition Author(s): Yang, H., Chen, X., Ji, X., Xiong, Y., Yang, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.273 (Depositor), 0.245 (DCC)
R-Value Work:
0.224 (Depositor), 0.227 (DCC)
R-Value Observed:
0.227 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5GXJ

This is version 1.1 of the entry. See complete history.

Literature

Viral protease activation mechanism

Yang, H., Chen, X., Ji, X., Xiong, Y., Yang, K., Wu, C.

To be published.

Macromolecule Content

Total Structure Weight: 47.41 kDa
Atom Count: 2,459
Modeled Residue Count: 322
Deposited Residue Count: 448
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FLAVIVIRUS_NS2B,LINKER,Peptidase S7	A, B	224	Zika virus, synthetic construct	Mutation(s): 0
UniProt
Find proteins for Q32ZE1 (Zika virus) Explore Q32ZE1 Go to UniProtKB: Q32ZE1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q32ZE1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.273 (Depositor), 0.245 (DCC)
R-Value Work: 0.224 (Depositor), 0.227 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.206	α = 90
b = 55.206	β = 90
c = 250.135	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-05-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-05-03
Type: Initial release
Version 1.1: 2024-11-13
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.