5GQH | pdb_00005gqh

Cryo-EM structure of PaeCas3-AcrF3 complex

PDB DOI: https://doi.org/10.2210/pdb5GQH/pdb
EM Map EMD-9535: EMDB EMDataResource

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Pseudomonas aeruginosa UCBPP-PA14, Pseudomonas phage JBD5
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-08-07 Released: 2016-09-21
Deposition Author(s): Zhang, X., Ma, J., Wang, Y., Wang, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 5GQH

This is version 1.3 of the entry. See complete history.

Literature

A CRISPR evolutionary arms race: structural insights into viral anti-CRISPR/Cas responses

Wang, J., Ma, J., Cheng, Z., Meng, X., You, L., Wang, M., Zhang, X., Wang, Y.

(2016) Cell Res 26: 1165-1168

PubMed: 27585537 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1038/cr.2016.103
Primary Citation Related Structures:
5GNF, 5GQH

Organizational Affiliation

Key Laboratory of RNA Biology, Beijing 100101, China.

Macromolecule Content

Total Structure Weight: 154.51 kDa
Atom Count: 6,641
Modeled Residue Count: 1,171
Deposited Residue Count: 1,368
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST	A	1,090	Pseudomonas aeruginosa UCBPP-PA14	Mutation(s): 0 Gene Names: cas3 EC: 3.1 (PDB Primary Data), 3.6.4 (PDB Primary Data)
UniProt
Find proteins for Q02ML8 (Pseudomonas aeruginosa (strain UCBPP-PA14)) Explore Q02ML8 Go to UniProtKB: Q02ML8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q02ML8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
anti-CRISPR protein 3	B, C	139	Pseudomonas phage JBD5	Mutation(s): 0 Gene Names: JBD5_035
UniProt
Find proteins for L7P7R7 (Pseudomonas phage JBD5) Explore L7P7R7 Go to UniProtKB: L7P7R7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	L7P7R7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-09-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-09-21
Type: Initial release
Version 1.1: 2016-10-19
Changes: Database references
Version 1.2: 2019-11-06
Changes: Data collection, Other
Version 1.3: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.