5GNA | pdb_00005gna

Crystal Structure of flagellin assembly related protein

PDB DOI: https://doi.org/10.2210/pdb5GNA/pdb

Classification: GENE REGULATION
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-07-20 Released: 2017-08-02
Deposition Author(s): Kim, H.J., Lee, H.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.229 (Depositor), 0.222 (DCC)
R-Value Work:
0.214 (Depositor), 0.215 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5GNA

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of flagellin assembly related protein

Kim, H.J., Lee, H.H.

To be published.

Macromolecule Content

Total Structure Weight: 18.45 kDa
Atom Count: 1,401
Modeled Residue Count: 152
Deposited Residue Count: 163
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellar protein FliT	A	96	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 0 Gene Names: fliT, STM1962
UniProt
Find proteins for P0A1N2 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0A1N2 Go to UniProtKB: P0A1N2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A1N2
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellar hook-associated protein 2	B	67	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 0 Gene Names: fliD, flaV, flbC, STM1960
UniProt
Find proteins for P16328 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P16328 Go to UniProtKB: P16328
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P16328
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.229 (Depositor), 0.222 (DCC)
R-Value Work: 0.214 (Depositor), 0.215 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 4₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.446	α = 90
b = 50.446	β = 90
c = 184.579	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-08-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-08-02
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.