5GMO | pdb_00005gmo

X-ray structure of carbonyl reductase SsCR

PDB DOI: https://doi.org/10.2210/pdb5GMO/pdb

Classification: OXIDOREDUCTASE
Organism(s): Scheffersomyces stipitis CBS 6054
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2016-07-14 Released: 2017-01-25
Deposition Author(s): Shang, Y.P., Yu, H.L., Xu, J.H.
Funding Organization(s): the National Natural Science Foundation of China, Shanghai Science and Technology Program, SKLBE

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.238 (Depositor), 0.242 (DCC)
R-Value Work:
0.182 (Depositor), 0.183 (DCC)
R-Value Observed:
0.185 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Efficient Synthesis of (R)-2-Chloro-1-(2,4-dichlorophenyl)ethanol with a Ketoreductase from Scheffersomyces stipitis CBS 6045

Shang, Y.P., Chen, Q., Kong, X.D., Zhang, Y.J., Xu, J.H., Yu, H.L.

(2017) Adv Synth Catal 359: 426-431

DOI: https://doi.org/10.1002/adsc.201601003

Macromolecule Content

Total Structure Weight: 37.01 kDa
Atom Count: 2,834
Modeled Residue Count: 331
Deposited Residue Count: 334
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein induced by osmotic stress	A	334	Scheffersomyces stipitis CBS 6054	Mutation(s): 0 Gene Names: GRP3.1, PICST_32463 EC: 1.1.1.195
UniProt
Find proteins for A3LWG4 (Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)) Explore A3LWG4 Go to UniProtKB: A3LWG4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A3LWG4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.238 (Depositor), 0.242 (DCC)
R-Value Work: 0.182 (Depositor), 0.183 (DCC)
R-Value Observed: 0.185 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.648	α = 90
b = 52.862	β = 90
c = 140.141	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-01-25

Deposition Author(s):

Funding Organization	Location	Grant Number
the National Natural Science Foundation of China	China	21276082
Shanghai Science and Technology Program	China	15JC1400403
SKLBE	China	2060204

Revision History (Full details and data files)

Version 1.0: 2017-01-25
Type: Initial release
Version 1.1: 2017-02-22
Changes: Database references
Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.