5FW9 | pdb_00005fw9

Human Spectrin SH3 domain D48G, E7Y, K60Y

PDB DOI: https://doi.org/10.2210/pdb5FW9/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-02-12 Released: 2016-12-28
Deposition Author(s): Gallego, P., Navarro, S., Ventura, S., Reverter, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.249 (Depositor), 0.243 (DCC)
R-Value Work:
0.203 (Depositor), 0.198 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Human Spectrin SH3 Domain D48G, E7Y, K60Y

Navarro, S., Gallego, P., Diaz, M., Ventura, S., Reverter, D.

To be published.

Macromolecule Content

Total Structure Weight: 7.24 kDa
Atom Count: 545
Modeled Residue Count: 57
Deposited Residue Count: 62
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SPECTRIN ALPHA CHAIN, NON-ERYTHROCYTIC 1	A	62	Homo sapiens	Mutation(s): 3
UniProt & NIH Common Fund Data Resources
Find proteins for Q13813 (Homo sapiens) Explore Q13813 Go to UniProtKB: Q13813
PHAROS: Q13813 GTEx: ENSG00000197694
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q13813
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.249 (Depositor), 0.243 (DCC)
R-Value Work: 0.203 (Depositor), 0.198 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.234	α = 90
b = 42.005	β = 90
c = 50.336	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-28
Type: Initial release
Version 1.1: 2024-01-10
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.