5FPW | pdb_00005fpw

proCathepsin B S9 from Trypanosoma congolense

PDB DOI: https://doi.org/10.2210/pdb5FPW/pdb

Classification: HYDROLASE
Organism(s): Trypanosoma congolense
Expression System: Komagataella pastoris
Mutation(s): Yes

Deposited: 2015-12-03 Released: 2016-02-17
Deposition Author(s): Sevajol, M., Biteau, N., Baltz, T., Franzetti, B., Vellieux, F.M.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.216 (Depositor), 0.216 (DCC)
R-Value Work:
0.179 (Depositor), 0.180 (DCC)
R-Value Observed:
0.181 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5FPW

This is version 2.1 of the entry. See complete history.

Literature

2.1 Angstrom Crystal Structure of Pro Cathepsin B S9 from Trypanosoma Congolense

Sevajol, M., Biteau, N., Baltz, T., Franzetti, B., Vellieux, F.M.D.

(null) Ph D Thesis

Macromolecule Content

Total Structure Weight: 108.2 kDa
Atom Count: 7,566
Modeled Residue Count: 880
Deposited Residue Count: 963
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PRO CATHEPSIN B S9	A, B, C	321	Trypanosoma congolense	Mutation(s): 2 EC: 3.4.22.1
UniProt
Find proteins for B2C331 (Trypanosoma congolense) Explore B2C331 Go to UniProtKB: B2C331
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B2C331
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.216 (Depositor), 0.216 (DCC)
R-Value Work: 0.179 (Depositor), 0.180 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: C 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.79	α = 90
b = 223.22	β = 90
c = 102.89	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-02-17

Deposition Author(s):

Vellieux, F.M.D.

Revision History (Full details and data files)

Version 1.0: 2016-02-17
Type: Initial release
Version 2.0: 2019-03-06
Changes: Advisory, Atomic model, Data collection, Experimental preparation, Other
Version 2.1: 2024-10-23
Changes: Advisory, Data collection, Database references, Other, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.