5FFX | pdb_00005ffx

S. aureus MepR G34K Mutant

PDB DOI: https://doi.org/10.2210/pdb5FFX/pdb

Classification: TRANSCRIPTION REGULATOR
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2015-12-19 Released: 2016-12-21
Deposition Author(s): Newman, C.E., Birukou, I., Brennan, R.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.47 Å
R-Value Free:
0.192 (Depositor), 0.188 (DCC)
R-Value Work:
0.154 (Depositor), 0.149 (DCC)
R-Value Observed:
0.154 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

S. aureus MepR G34K Mutant

Newman, C.E., Birukou, I., Brennan, R.G.

To be published.

Macromolecule Content

Total Structure Weight: 76.66 kDa
Atom Count: 5,811
Modeled Residue Count: 551
Deposited Residue Count: 644
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MarR family regulatory protein	A, B [auth D], C [auth B], D [auth C]	161	Staphylococcus aureus	Mutation(s): 1 Gene Names: mepR
UniProt
Find proteins for Q2G141 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2G141 Go to UniProtKB: Q2G141
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2G141
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain R [auth C] SDF format, chain Q [auth C] SDF format, chain P [auth C] SDF format, chain O [auth B] SDF format, chain N [auth B] SDF format, chain M [auth B] SDF format, chain L [auth B] SDF format, chain K [auth B] SDF format, chain I [auth D] SDF format, chain H [auth D] SDF format, chain G [auth D] SDF format, chain F [auth A] SDF format, chain E [auth A] MOL2 format, chain R [auth C] MOL2 format, chain Q [auth C] MOL2 format, chain P [auth C] MOL2 format, chain O [auth B] MOL2 format, chain N [auth B] MOL2 format, chain M [auth B] MOL2 format, chain L [auth B] MOL2 format, chain K [auth B] MOL2 format, chain I [auth D] MOL2 format, chain H [auth D] MOL2 format, chain G [auth D] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] mmCIF format, chain R [auth C] mmCIF format, chain Q [auth C] mmCIF format, chain P [auth C] mmCIF format, chain O [auth B] mmCIF format, chain N [auth B] mmCIF format, chain M [auth B] mmCIF format, chain L [auth B] mmCIF format, chain K [auth B] mmCIF format, chain I [auth D] mmCIF format, chain H [auth D] mmCIF format, chain G [auth D] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A]	E [auth A] F [auth A] G [auth D] H [auth D] I [auth D] E [auth A], F [auth A], G [auth D], H [auth D], I [auth D], K [auth B], L [auth B], M [auth B], N [auth B], O [auth B], P [auth C], Q [auth C], R [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth D] Focus chain H [auth D] Focus chain I [auth D] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth C] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth D] Focus chain H [auth D] Focus chain I [auth D] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth C]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain S [auth C] SDF format, chain J [auth D] MOL2 format, chain S [auth C] MOL2 format, chain J [auth D] mmCIF format, chain S [auth C] mmCIF format, chain J [auth D]	J [auth D], S [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain J [auth D] Focus chain S [auth C] Interactions & Density Focus chain J [auth D] Focus chain S [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.47 Å
R-Value Free: 0.192 (Depositor), 0.188 (DCC)
R-Value Work: 0.154 (Depositor), 0.149 (DCC)
R-Value Observed: 0.154 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.297	α = 90
b = 96.461	β = 90.66
c = 109.486	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Coot	model building
HKL-3000	data scaling
PHENIX	phasing
HKL-3000	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-21
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.