5EUR

Hypothetical protein SF216 from shigella flexneri 5a M90T

• PDB DOI: https://doi.org/10.2210/pdb5EUR/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Shigella flexneri 5a str. M90T
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-11-19 Released: 2016-11-23 
• Deposition Author(s): Lee, Y.-S., Seok, S.-H., Kim, H.-N., An, J.-G., Chung, K.Y., Won, H.-S., Seo, M.-D.
• Funding Organization(s): National Research Foundation of Korea

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.240 
• R-Value Work: 0.205 
• R-Value Observed: 0.206 

Literature

Crystal structure of SF216 from Shigella flexneri strain 5a

Lee, Y.-S., Seok, S.-H., Kim, H.-N., An, J.-G., Chung, K.Y., Won, H.-S., Seo, M.-D.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 45.85 kDa 
• Atom Count: 2,947 
• Modelled Residue Count: 334 
• Deposited Residue Count: 408 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B, C	136	Shigella flexneri 5a str. M90T	Mutation(s): 0  Gene Names: SF5M90T_216

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
MG	D [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.240 
• R-Value Work: 0.205 
• R-Value Observed: 0.206 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.399	α = 90
b = 50.411	β = 104.1
c = 99.921	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	model building
PHENIX	phasing
HKL-2000	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-11-23 
Deposition Author(s): Lee, Y.-S., Seok, S.-H., Kim, H.-N., An, J.-G., Chung, K.Y., Won, H.-S., Seo, M.-D.

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Funding Organization	Location	Grant Number
National Research Foundation of Korea	Korea, Republic Of	2012R1A1A1039738
National Research Foundation of Korea	Korea, Republic Of	2014R1A1A2054691

Revision History  

• Version 1.0: 2016-11-23
  Type: Initial release
  
• Version 1.1: 2017-10-04
  Changes: Data collection, Derived calculations
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references