5EQZ | pdb_00005eqz

Crystal structure of a Rev protein from Borrelia burgdorferi at 1.80 A resolution

PDB DOI: https://doi.org/10.2210/pdb5EQZ/pdb

Classification: TRANSCRIPTION
Organism(s): Borreliella burgdorferi B31
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-11-13 Released: 2015-12-09
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.242 (Depositor), 0.246 (DCC)
R-Value Work:
0.203 (Depositor), 0.206 (DCC)
R-Value Observed:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5EQZ

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of a Rev protein from Borrelia burgdorferi at 1.80 A resolution

Yano, J.K., Sullivan, A.H., Abendroth, J., Lorimer, D.D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 16.38 kDa
Atom Count: 1,166
Modeled Residue Count: 138
Deposited Residue Count: 146
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rev protein	A	146	Borreliella burgdorferi B31	Mutation(s): 0 Gene Names: BB_M27
UniProt
Find proteins for Q9S0B8 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore Q9S0B8 Go to UniProtKB: Q9S0B8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9S0B8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.242 (Depositor), 0.246 (DCC)
R-Value Work: 0.203 (Depositor), 0.206 (DCC)
R-Value Observed: 0.207 (Depositor)

Diffraction Data:

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.97	α = 90
b = 42.51	β = 109.21
c = 64.14	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-12-09

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2015-12-09
Type: Initial release
Version 1.1: 2017-10-11
Changes: Data collection, Derived calculations
Version 1.2: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.