5EN6 | pdb_00005en6

Crystal structure of the Smu1-RED complex (SeMet) of Caenorhabditis elegans

PDB DOI: https://doi.org/10.2210/pdb5EN6/pdb

Classification: SPLICING
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-11-09 Released: 2016-04-20
Deposition Author(s): Ulrich, A.K.C., Wahl, M.C.
Funding Organization(s): German Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.321 (Depositor), 0.328 (DCC)
R-Value Work:
0.283 (Depositor), 0.292 (DCC)
R-Value Observed:
0.285 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5EN6

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the Smu1-RED complex (SeMet) of Caenorhabditis elegans

Ulrich, A.K.C., Schulz, J.F., Kamprad, A., Schuetze, T., Wahl, M.C.

To be published.

Macromolecule Content

Total Structure Weight: 55.63 kDa
Atom Count: 3,186
Modeled Residue Count: 393
Deposited Residue Count: 494
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SMU-1	A, B	184	Caenorhabditis elegans	Mutation(s): 0 Gene Names: smu-1, CC4.3, CELE_CC4.3
UniProt
Find proteins for G5EEG7 (Caenorhabditis elegans) Explore G5EEG7 Go to UniProtKB: G5EEG7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G5EEG7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Suppressor of Mec and Unc defects	C, D	63	Caenorhabditis elegans	Mutation(s): 0 Gene Names: smu-2, CELE_Y49F6B.4, Y49F6B.4
UniProt
Find proteins for Q9N4U5 (Caenorhabditis elegans) Explore Q9N4U5 Go to UniProtKB: Q9N4U5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9N4U5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.321 (Depositor), 0.328 (DCC)
R-Value Work: 0.283 (Depositor), 0.292 (DCC)
R-Value Observed: 0.285 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 166.669	α = 90
b = 183.443	β = 90
c = 41.078	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
SHARP	phasing
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-04-20

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation	Germany	WA1126/7-1

Revision History (Full details and data files)

Version 1.0: 2016-04-20
Type: Initial release
Version 1.1: 2024-11-13
Changes: Author supporting evidence, Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.