5E3V | pdb_00005e3v

Truncated X-ray crystal structure of Adenylosuccinate Lyase from Salmonella typhimurium

• PDB DOI: https://doi.org/10.2210/pdb5E3V/pdb

• Classification: LYASE
• Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-10-04 Released: 2016-10-05 
• Deposition Author(s): Banerjee, S., Agrawal, M.J., Murthy, M.R.N.
• Funding Organization(s): Department of Biotechnology, Department of Science and Technology, Council of Scientific and Industrial Research

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.72 Å
• R-Value Free: 
  0.326 (Depositor), 0.326 (DCC) 
• R-Value Work: 
  0.274 (Depositor), 0.282 (DCC) 
• R-Value Observed: 
  0.277 (Depositor) 

Starting Model: experimental

Literature

Crystallographic and kinetic studies on Adenylosuccinate Lyase from Salmonella typhimurium

Banerjee, S., Agrawal, M.J., Murthy, N.M., Balaram, H., Savithri, H.S., Murthy, M.R.N.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 42.77 kDa 
• Atom Count: 2,281 
• Modeled Residue Count: 310 
• Deposited Residue Count: 380 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenylosuccinate lyase	A	380	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S	Mutation(s): 0  Gene Names: purB, STM14_1410 EC: 4.3.2.2
UniProt
Find proteins for A0A0F6B070 (Salmonella typhimurium (strain 14028s / SGSC 2262)) Explore A0A0F6B070  Go to UniProtKB:  A0A0F6B070

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.72 Å
• R-Value Free:  0.326 (Depositor), 0.326 (DCC) 
• R-Value Work:  0.274 (Depositor), 0.282 (DCC) 
• R-Value Observed: 0.277 (Depositor) 

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 165.36	α = 90
b = 165.36	β = 90
c = 79.12	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2016-10-05 
Deposition Author(s): Banerjee, S., Agrawal, M.J., Murthy, M.R.N.

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Funding Organization	Location	Grant Number
Department of Biotechnology	India	--
Department of Science and Technology	India	--
Council of Scientific and Industrial Research	India	--

Revision History  

• Version 1.0: 2016-10-05
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description