5DPO | pdb_00005dpo

The crystal structure of uncharacterized protein (LPG2149) from Legionella pneumophila

• PDB DOI: https://doi.org/10.2210/pdb5DPO/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Legionella pneumophila str. Paris
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-09-13 Released: 2015-11-25 
• Deposition Author(s): Nocek, B., Cuff, M., Evdokimova, E., Joachimiak, A., Savchenko, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.64 Å
• R-Value Free: 
  0.207 (Depositor), 0.205 (DCC) 
• R-Value Work: 
  0.176 (Depositor), 0.176 (DCC) 
• R-Value Observed: 
  0.178 (Depositor) 

Literature

The crystal structure of uncharacterized protein (LPG2149) from Legionella pneumophila

Nocek, B., Cuff, M., Evdokimova, E., Joachimiak, A., Savchenko, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 14.21 kDa 
• Atom Count: 1,068 
• Modeled Residue Count: 104 
• Deposited Residue Count: 119 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	119	Legionella pneumophila str. Paris	Mutation(s): 0

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.64 Å
• R-Value Free:  0.207 (Depositor), 0.205 (DCC) 
• R-Value Work:  0.176 (Depositor), 0.176 (DCC) 
• R-Value Observed: 0.178 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.679	α = 90
b = 35.679	β = 90
c = 178.745	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-25 
Deposition Author(s): Nocek, B., Cuff, M., Evdokimova, E., Joachimiak, A., Savchenko, A.

Revision History  

• Version 1.0: 2015-11-25
  Type: Initial release
  
• Version 1.1: 2024-11-06
  Changes: Data collection, Database references, Derived calculations, Structure summary