5DBQ | pdb_00005dbq

Crystal structure of insect thioredoxin at 1.95 Angstroms

PDB DOI: https://doi.org/10.2210/pdb5DBQ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Anticarsia gemmatalis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-08-21 Released: 2016-08-24
Deposition Author(s): Klinke, S., Tejedor, M.D., Cerutti, M.L., Giacometti, R., Otero, L.H., Goldbaum, F.A., Zavala, J.A., Wolosiuk, R.A., Pagano, E.A.
Funding Organization(s): ANPCyT

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.250 (Depositor), 0.258 (DCC)
R-Value Work:
0.210 (Depositor), 0.217 (DCC)
R-Value Observed:
0.212 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of insect thioredoxin at 1.95 Angstroms

Klinke, S., Tejedor, M.D., Cerutti, M.L., Giacometti, R., Otero, L.H., Goldbaum, F.A., Zavala, J.A., Wolosiuk, R.A., Pagano, E.A.

To be published.

Macromolecule Content

Total Structure Weight: 24.28 kDa
Atom Count: 1,836
Modeled Residue Count: 212
Deposited Residue Count: 218
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin	A, B	109	Anticarsia gemmatalis	Mutation(s): 0
UniProt
Find proteins for A0A0Y0BMD0 (Anticarsia gemmatalis) Explore A0A0Y0BMD0 Go to UniProtKB: A0A0Y0BMD0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0Y0BMD0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.250 (Depositor), 0.258 (DCC)
R-Value Work: 0.210 (Depositor), 0.217 (DCC)
R-Value Observed: 0.212 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.71	α = 90
b = 28.98	β = 128.32
c = 79.86	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
PROTEUM PLUS	data collection
XDS	data scaling
MrBUMP	phasing
MOLREP	phasing
PHASER	phasing
Coot	model building
XDS	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2016-08-24

Deposition Author(s):

Funding Organization	Location	Grant Number
ANPCyT	Argentina	PICT 2011-2115
ANPCyT	Argentina	PPL2-03

Revision History (Full details and data files)

Version 1.0: 2016-08-24
Type: Initial release
Version 1.1: 2017-09-27
Changes: Data collection, Derived calculations, Refinement description
Version 1.2: 2023-09-27
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.