5CH6 | pdb_00005ch6

Crystal Structure of FRIGIDA Flowering-time Regulator

PDB DOI: https://doi.org/10.2210/pdb5CH6/pdb

Classification: TRANSCRIPTION
Organism(s): Vitis vinifera
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-07-10 Released: 2016-05-25
Deposition Author(s): Hyun, K., Song, J.J.
Funding Organization(s): Nation Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.26 Å
R-Value Free:
0.239 (Depositor), 0.239 (DCC)
R-Value Work:
0.225 (Depositor), 0.225 (DCC)
R-Value Observed:
0.225 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5CH6

This is version 1.2 of the entry. See complete history.

Literature

Structural Analysis of FRIGIDA Flowering-Time Regulator

Hyun, K., Oh, J.E., Park, J., Noh, Y.S., Song, J.J.

(2016) Mol Plant 9: 618-620

PubMed: 26633860 Search on PubMed
DOI: https://doi.org/10.1016/j.molp.2015.11.009
Primary Citation Related Structures:
5CH6

Organizational Affiliation

Department of Biological Sciences, KAIST Institute of the BioCentury, KAIST, Daejeon 34141, Korea.

Macromolecule Content

Total Structure Weight: 98.56 kDa
Atom Count: 6,819
Modeled Residue Count: 855
Deposited Residue Count: 867
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FRIGIDA	A, B, C	289	Vitis vinifera	Mutation(s): 0
UniProt
Find proteins for A0A182DWB3 (Vitis vinifera) Explore A0A182DWB3 Go to UniProtKB: A0A182DWB3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A182DWB3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.26 Å
R-Value Free: 0.239 (Depositor), 0.239 (DCC)
R-Value Work: 0.225 (Depositor), 0.225 (DCC)
R-Value Observed: 0.225 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.884	α = 90
b = 148.884	β = 90
c = 262.326	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
PHENIX	phasing
Coot	model building
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2016-05-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Nation Research Foundation	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2016-05-25
Type: Initial release
Version 1.1: 2020-02-19
Changes: Data collection, Derived calculations
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.