5BPV | pdb_00005bpv

Crystal Structure of Zaire ebolavirus VP35 RNA binding domain mutant I278A

• PDB DOI: https://doi.org/10.2210/pdb5BPV/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Zaire ebolavirus
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2015-05-28 Released: 2016-06-29 
• Deposition Author(s): Fadda, V., Cannas, V., Zinzula, L., Distinto, S., Daino, G.L., Bianco, G., Corona, A., Esposito, F., Alcaro, S., Maccioni, E., Tramontano, E., Taylor, G.L.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 
  0.218 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.180 (Depositor), 0.185 (DCC) 
• R-Value Observed: 
  0.182 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Zaire ebolavirus VP35 RNA binding domain mutant I278A

Fadda, V., Cannas, V., Zinzula, L., Distinto, S., Daino, G.L., Bianco, G., Corona, A., Esposito, F., Alcaro, S., Maccioni, E., Tramontano, E., Taylor, G.L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 27.31 kDa 
• Atom Count: 2,209 
• Modeled Residue Count: 247 
• Deposited Residue Count: 248 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polymerase cofactor VP35	A, B	124	Zaire ebolavirus	Mutation(s): 1  Gene Names: VP35
UniProt
Find proteins for Q05127 (Zaire ebolavirus (strain Mayinga-76)) Explore Q05127  Go to UniProtKB:  Q05127

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free:  0.218 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.180 (Depositor), 0.185 (DCC) 
• R-Value Observed: 0.182 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.75	α = 90
b = 65.66	β = 90
c = 72.02	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-06-29 
Deposition Author(s): Fadda, V., Cannas, V., Zinzula, L., Distinto, S., Daino, G.L., Bianco, G., Corona, A., Esposito, F., Alcaro, S., Maccioni, E., Tramontano, E., Taylor, G.L.

Revision History  

• Version 1.0: 2016-06-29
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description