5B6K | pdb_00005b6k

Crystal structure of Ketoreductase 1 from Candida glabrata

PDB DOI: https://doi.org/10.2210/pdb5B6K/pdb

Classification: OXIDOREDUCTASE
Organism(s): Nakaseomyces glabratus CBS 138
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-05-30 Released: 2017-05-31
Deposition Author(s): Qin, B., Mori, T., Abe, I., You, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.191 (Depositor), 0.191 (DCC)
R-Value Work:
0.168 (Depositor), 0.169 (DCC)
R-Value Observed:
0.169 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5B6K

This is version 1.2 of the entry. See complete history.

Literature

Engineering of Candida glabrata Ketoreductase 1 for Asymmetric Reduction of alpha-Halo Ketones

Qin, F., Qin, B., Mori, T., Wang, Y., Meng, L., Zhang, X., Jia, X., Abe, I., You, S.

To be published.

Macromolecule Content

Total Structure Weight: 40.85 kDa
Atom Count: 3,000
Modeled Residue Count: 336
Deposited Residue Count: 366
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein CgKR1	A	366	Nakaseomyces glabratus CBS 138	Mutation(s): 0 Gene Names: GRE2(A), CAGL0E05170g
UniProt
Find proteins for Q6FV31 (Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)) Explore Q6FV31 Go to UniProtKB: Q6FV31
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6FV31
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.191 (Depositor), 0.191 (DCC)
R-Value Work: 0.168 (Depositor), 0.169 (DCC)
R-Value Observed: 0.169 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.62	α = 90
b = 61.62	β = 90
c = 189.93	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-05-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-05-31
Type: Initial release
Version 1.1: 2020-09-16
Changes: Structure summary
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.