5B6I

Structure of fluorinase from Streptomyces sp. MA37


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 

Starting Model: experimental
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This is version 1.2 of the entry. See complete history


Literature

Directed Evolution of a Fluorinase for Improved Fluorination Efficiency with a Non-native Substrate

Sun, H.Yeo, W.L.Lim, Y.H.Chew, X.Smith, D.J.Xue, B.Chan, K.P.Robinson, R.C.Robins, E.G.Zhao, H.Ang, E.L.

(2016) Angew Chem Int Ed Engl 55: 14277-14280

  • DOI: https://doi.org/10.1002/anie.201606722
  • Primary Citation of Related Structures:  
    5B6I

  • PubMed Abstract: 

    Fluorinases offer an environmentally friendly alternative for selective fluorination under mild conditions. However, their diversity is limited in nature and they have yet to be engineered through directed evolution. Herein, we report the directed evolution of the fluorinase FlA1 for improved conversion of the non-native substrate 5'-chloro-5'-deoxyadenosine (5'-ClDA) into 5'-fluoro-5'-deoxyadenosine (5'-FDA). The evolved variants, fah2081 (A279Y) and fah2114 (F213Y, A279L), were successfully applied in the radiosynthesis of 5'-[ 18 F]FDA, with overall radiochemical conversion (RCC) more than 3-fold higher than wild-type FlA1. Kinetic studies of the two-step reaction revealed that the variants show a significantly improved k cat value in the conversion of 5'-ClDA into S-adenosyl-l-methionine (SAM) but a reduced k cat value in the conversion of SAM into 5'-FDA.


  • Organizational Affiliation

    Metabolic Engineering Research Laboratory (MERL), Science and Engineering Institutes, Agency for Science, Technology, and Research (A*STAR), 31 Biopolis Way, Nanos #01-01, Singapore, 138669, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fluorinase
A, B
319Streptomyces sp. MA37Mutation(s): 0 
Gene Names: flA1
EC: 2.5.1.63 (UniProt), 3.13.2.3 (UniProt), 2.5.1.94 (UniProt)
UniProt
Find proteins for W0W999 (Streptomyces sp)
Explore W0W999 
Go to UniProtKB:  W0W999
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW0W999
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.635α = 90
b = 125.635β = 90
c = 125.635γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SAINTdata reduction
PDB_EXTRACTdata extraction
SAINTdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-26
    Type: Initial release
  • Version 1.1: 2016-11-16
    Changes: Database references
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Derived calculations, Refinement description