Download MendeleyCrystal structure of hen egg-white lysozyme
Sugahara, M., Suzuki, M., Nango, E.To be published.
5B1F
Crystal structure of hen egg-white lysozyme
- PDB DOI: https://doi.org/10.2210/pdb5B1F/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2015-12-03 Released: 2016-12-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.215
- R-Value Work: 0.173
- R-Value Observed: 0.175
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme C | 129 | Gallus gallus | Mutation(s): 0 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | B [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.215
- R-Value Work: 0.173
- R-Value Observed: 0.175
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.11577/1249397
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.1 | α = 90 |
| b = 79.1 | β = 90 |
| c = 38 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| CrystFEL | data processing |
Entry History
Deposition Data
- Released Date: 2016-12-07 Deposition Author(s): Sugahara, M., Suzuki, M., Nango, E.
Revision History (Full details and data files)
- Version 1.0: 2016-12-07
Type: Initial release - Version 1.1: 2018-01-24
Changes: Data collection - Version 1.2: 2023-09-06
Changes: Data collection, Database references - Version 1.3: 2023-11-08
Changes: Refinement description
