5B01 | pdb_00005b01

Structure of a prenyltransferase in its unbound form

PDB DOI: https://doi.org/10.2210/pdb5B01/pdb

Classification: TRANSFERASE
Organism(s): Streptomyces viridosporus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-10-27 Released: 2016-11-02
Deposition Author(s): Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.45 Å
R-Value Free:
0.261 (Depositor), 0.260 (DCC)
R-Value Work:
0.225 (Depositor), 0.225 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structure and function of a prenyltransferase

Zhang, L., Chen, C.-C., Ko, T.-P., Guo, R.-T., Oldfield, E.O.

To be published.

Macromolecule Content

Total Structure Weight: 322.58 kDa
Atom Count: 20,030
Modeled Residue Count: 2,620
Deposited Residue Count: 2,940
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MoeN5	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	294	Streptomyces viridosporus	Mutation(s): 0 Gene Names: moeN5
UniProt
Find proteins for A0A010 (Streptomyces viridosporus) Explore A0A010 Go to UniProtKB: A0A010
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A010
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.45 Å
R-Value Free: 0.261 (Depositor), 0.260 (DCC)
R-Value Work: 0.225 (Depositor), 0.225 (DCC)

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.604	α = 90
b = 106.604	β = 90
c = 310.713	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-11-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-11-02
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.