Download MendeleyCrystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate
Wachino, J., Arakawa, Y.To be published.
5AXR
Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate
- PDB DOI: https://doi.org/10.2210/pdb5AXR/pdb
- Classification: HYDROLASE
- Organism(s): Serratia marcescens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-07-31 Released: 2016-05-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.214
- R-Value Work: 0.150
- R-Value Observed: 0.153
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Metallo-beta-lactamase | 262 | Serratia marcescens | Mutation(s): 0 Gene Names: SMB-1 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for G5ELM3 (Serratia marcescens) Explore G5ELM3 Go to UniProtKB: G5ELM3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G5ELM3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| COM Query on COM | J [auth A] | 1-THIOETHANESULFONIC ACID C2 H6 O3 S2 ZNEWHQLOPFWXOF-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | B [auth A], C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.214
- R-Value Work: 0.150
- R-Value Observed: 0.153
- Space Group: P 31
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.112 | α = 90 |
| b = 67.112 | β = 90 |
| c = 46.717 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-05-11 Deposition Author(s): Wachino, J., Arakawa, Y.
Revision History (Full details and data files)
- Version 1.0: 2016-05-11
Type: Initial release - Version 1.1: 2020-02-26
Changes: Data collection, Derived calculations - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-10-23
Changes: Structure summary
