5A5U | pdb_00005a5u

Structure of mammalian eIF3 in the context of the 43S preinitiation complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.5 of the entry. See complete history

Literature

Structure of Mammalian Eif3 in the Context of the 43S Preinitiation Complex.

Des-Georges, A.Dhote, V.Kuhn, L.Hellen, C.U.T.Pestova, T.V.Frank, J.Hashem, Y.

(2015) Nature 525: 491

  • DOI: https://doi.org/10.1038/nature14891
  • Primary Citation Related Structures: 
    5A5T, 5A5U

  • PubMed Abstract: 

    During eukaryotic translation initiation, 43S complexes, comprising a 40S ribosomal subunit, initiator transfer RNA and initiation factors (eIF) 2, 3, 1 and 1A, attach to the 5'-terminal region of messenger RNA and scan along it to the initiation codon. Scanning on structured mRNAs also requires the DExH-box protein DHX29. Mammalian eIF3 contains 13 subunits and participates in nearly all steps of translation initiation. Eight subunits having PCI (proteasome, COP9 signalosome, eIF3) or MPN (Mpr1, Pad1, amino-terminal) domains constitute the structural core of eIF3, to which five peripheral subunits are flexibly linked. Here we present a cryo-electron microscopy structure of eIF3 in the context of the DHX29-bound 43S complex, showing the PCI/MPN core at ∼6 Å resolution. It reveals the organization of the individual subunits and their interactions with components of the 43S complex. We were able to build near-complete polyalanine-level models of the eIF3 PCI/MPN core and of two peripheral subunits. The implications for understanding mRNA ribosomal attachment and scanning are discussed.


  • Organizational Affiliation
    • HHMI, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.

Macromolecule Content 

  • Total Structure Weight: 167.82 kDa 
  • Atom Count: 8,124 
  • Modeled Residue Count: 1,009 
  • Deposited Residue Count: 1,522 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
EUKARYOTIC INITIATION FACTOR 354Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B1,121Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SZ03 (Oryctolagus cuniculus)
Explore G1SZ03 
Go to UniProtKB:  G1SZ03
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SZ03
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT IC [auth I]347Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for P40217 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40217 
Go to UniProtKB:  P40217
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40217
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-09
    Type: Initial release
  • Version 1.1: 2015-09-23
    Changes: Database references
  • Version 1.2: 2015-09-30
    Changes: Database references
  • Version 1.3: 2017-08-30
    Changes: Data collection
  • Version 1.4: 2018-10-03
    Changes: Data collection
  • Version 1.5: 2024-05-08
    Changes: Data collection, Database references