4V9P

Control of ribosomal subunit rotation by elongation factor G

• PDB DOI: https://doi.org/10.2210/pdb4V9P/pdb
• Entry: 4V9P supersedes: 4KJ5, 4KJ6, 4KJ7, 4KJ8, 4KJ9, 4KJA, 4KJB, 4KJC
• NAKB: 4V9P

• Classification: ribosome/antibiotic
• Organism(s): Escherichia coli K-12, Streptomyces
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-05-03 Released: 2014-07-09 
• Deposition Author(s): Pulk, A., Cate, J.H.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.267 
• R-Value Work: 0.215 

Literature

Control of ribosomal subunit rotation by elongation factor G.

Pulk, A., Cate, J.H.

(2013) Science 340: 1235970-1235970

• PubMed: 23812721 
• DOI: https://doi.org/10.1126/science.1235970
• Primary Citation of Related Structures:  
  4V9O, 4V9P


• PubMed Abstract: 
  

  Protein synthesis by the ribosome requires the translocation of transfer RNAs and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosomal subunit rotation and is catalyzed by the guanosine triphosphatase (GTPase) elongation factor G (EF-G). We determined 3 angstrom resolution x-ray crystal structures of EF-G complexed with a nonhydrolyzable guanosine 5'-triphosphate (GTP) analog and bound to the Escherichia coli ribosome in different states of ribosomal subunit rotation. The structures reveal that EF-G binding to the ribosome stabilizes switch regions in the GTPase active site, resulting in a compact EF-G conformation that favors an intermediate state of ribosomal subunit rotation. These structures suggest that EF-G controls the translocation reaction by cycles of conformational rigidity and relaxation before and after GTP hydrolysis.

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Organizational Affiliation: 

Department of Molecular and Cell Biology, California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 52-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1y1z1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 52-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1y1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 51-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1y1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 51-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 52-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1y1z1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 52-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1y1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 50-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 50-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1 

Biological assembly 4 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8,915.59 kDa 
• Atom Count: 590,573 
• Modelled Residue Count: 43,574 
• Deposited Residue Count: 44,972 
• Unique protein chains: 52
• Unique nucleic acid chains: 3

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L2	C [auth AC], FB [auth CC], HD [auth EC], KF [auth GC]	273	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P60422 (Escherichia coli (strain K12)) Explore P60422  Go to UniProtKB:  P60422

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L3	D [auth AD], GB [auth CD], ID [auth ED], LF [auth GD]	209	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P60438 (Escherichia coli (strain K12)) Explore P60438  Go to UniProtKB:  P60438

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L4	E [auth AE], HB [auth CE], JD [auth EE], MF [auth GE]	201	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P60723 (Escherichia coli (strain K12)) Explore P60723  Go to UniProtKB:  P60723

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L5	F [auth AF], IB [auth CF], KD [auth EF], NF [auth GF]	179	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P62399 (Escherichia coli (strain K12)) Explore P62399  Go to UniProtKB:  P62399

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L6	G [auth AG], JB [auth CG], LD [auth EG], OF [auth GG]	177	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AG55 (Escherichia coli (strain K12)) Explore P0AG55  Go to UniProtKB:  P0AG55

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L9	H [auth AH], KB [auth CH], MD [auth EH], PF [auth GH]	50	Escherichia coli K-12	Mutation(s): 0  Gene Names: rpll
UniProt
Find proteins for P0A7R1 (Escherichia coli (strain K12)) Explore P0A7R1  Go to UniProtKB:  P0A7R1

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L11	I [auth AI], LB [auth CI], ND [auth EI], QF [auth GI]	142	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7J7 (Escherichia coli (strain K12)) Explore P0A7J7  Go to UniProtKB:  P0A7J7

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13	J [auth AJ], MB [auth CJ], OD [auth EJ], RF [auth GJ]	142	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AA10 (Escherichia coli (strain K12)) Explore P0AA10  Go to UniProtKB:  P0AA10

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L14	K [auth AK], NB [auth CK], PD [auth EK], SF [auth GK]	123	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0ADY3 (Escherichia coli (strain K12)) Explore P0ADY3  Go to UniProtKB:  P0ADY3

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L15	L [auth AL], OB [auth CL], QD [auth EL], TF [auth GL]	144	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P02413 (Escherichia coli (strain K12)) Explore P02413  Go to UniProtKB:  P02413

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L16	M [auth AM], PB [auth CM], RD [auth EM], UF [auth GM]	136	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0ADY7 (Escherichia coli (strain K12)) Explore P0ADY7  Go to UniProtKB:  P0ADY7

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L17	N [auth AN], QB [auth CN], SD [auth EN], VF [auth GN]	127	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AG44 (Escherichia coli (strain K12)) Explore P0AG44  Go to UniProtKB:  P0AG44

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L18	O [auth AO], RB [auth CO], TD [auth EO], WF [auth GO]	117	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0C018 (Escherichia coli (strain K12)) Explore P0C018  Go to UniProtKB:  P0C018

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L19	P [auth AP], SB [auth CP], UD [auth EP], XF [auth GP]	115	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7K6 (Escherichia coli (strain K12)) Explore P0A7K6  Go to UniProtKB:  P0A7K6

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L20	Q [auth AQ], TB [auth CQ], VD [auth EQ], YF [auth GQ]	118	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7L3 (Escherichia coli (strain K12)) Explore P0A7L3  Go to UniProtKB:  P0A7L3

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L21	R [auth AR], UB [auth CR], WD [auth ER], ZF [auth GR]	103	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AG48 (Escherichia coli (strain K12)) Explore P0AG48  Go to UniProtKB:  P0AG48

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L22	AG [auth GS], S [auth AS], VB [auth CS], XD [auth ES]	110	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P61175 (Escherichia coli (strain K12)) Explore P61175  Go to UniProtKB:  P61175

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L23	BG [auth GT], T [auth AT], WB [auth CT], YD [auth ET]	100	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0ADZ0 (Escherichia coli (strain K12)) Explore P0ADZ0  Go to UniProtKB:  P0ADZ0

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L24	CG [auth GU], U [auth AU], XB [auth CU], ZD [auth EU]	104	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P60624 (Escherichia coli (strain K12)) Explore P60624  Go to UniProtKB:  P60624

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L25	AE [auth EV], DG [auth GV], V [auth AV], YB [auth CV]	94	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P68919 (Escherichia coli (strain K12)) Explore P68919  Go to UniProtKB:  P68919

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L27	BE [auth EW], EG [auth GW], W [auth AW], ZB [auth CW]	85	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7L8 (Escherichia coli (strain K12)) Explore P0A7L8  Go to UniProtKB:  P0A7L8

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L28	AC [auth CX], CE [auth EX], FG [auth GX], X [auth AX]	78	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7M2 (Escherichia coli (strain K12)) Explore P0A7M2  Go to UniProtKB:  P0A7M2

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L29	BC [auth CY], DE [auth EY], GG [auth GY], Y [auth AY]	63	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7M6 (Escherichia coli (strain K12)) Explore P0A7M6  Go to UniProtKB:  P0A7M6

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L30	CC [auth CZ], EE [auth EZ], HG [auth GZ], Z [auth AZ]	59	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AG51 (Escherichia coli (strain K12)) Explore P0AG51  Go to UniProtKB:  P0AG51

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L32	AA [auth A0], DC [auth C0], FE [auth E0], IG [auth G0]	57	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7N4 (Escherichia coli (strain K12)) Explore P0A7N4  Go to UniProtKB:  P0A7N4

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L33	BA [auth A1], EC [auth C1], GE [auth E1], JG [auth G1]	55	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7N9 (Escherichia coli (strain K12)) Explore P0A7N9  Go to UniProtKB:  P0A7N9

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L34	CA [auth A2], FC [auth C2], HE [auth E2], KG [auth G2]	46	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7P5 (Escherichia coli (strain K12)) Explore P0A7P5  Go to UniProtKB:  P0A7P5

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L35	DA [auth A3], GC [auth C3], IE [auth E3], LG [auth G3]	65	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7Q1 (Escherichia coli (strain K12)) Explore P0A7Q1  Go to UniProtKB:  P0A7Q1

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L36	EA [auth A4], HC [auth C4], JE [auth E4], MG [auth G4]	38	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7Q6 (Escherichia coli (strain K12)) Explore P0A7Q6  Go to UniProtKB:  P0A7Q6

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L10	FA [auth A5], KE [auth E5]	165	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7J3 (Escherichia coli (strain K12)) Explore P0A7J3  Go to UniProtKB:  P0A7J3

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S2	HA [auth BB], JC [auth DB], ME [auth FB], OG [auth HB]	241	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7V0 (Escherichia coli (strain K12)) Explore P0A7V0  Go to UniProtKB:  P0A7V0

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S3	IA [auth BC], KC [auth DC], NE [auth FC], PG [auth HC]	233	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7V3 (Escherichia coli (strain K12)) Explore P0A7V3  Go to UniProtKB:  P0A7V3

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S4	JA [auth BD], LC [auth DD], OE [auth FD], QG [auth HD]	206	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7V8 (Escherichia coli (strain K12)) Explore P0A7V8  Go to UniProtKB:  P0A7V8

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S5	KA [auth BE], MC [auth DE], PE [auth FE], RG [auth HE]	167	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7W1 (Escherichia coli (strain K12)) Explore P0A7W1  Go to UniProtKB:  P0A7W1

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6	LA [auth BF], NC [auth DF], QE [auth FF], SG [auth HF]	135	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P02358 (Escherichia coli (strain K12)) Explore P02358  Go to UniProtKB:  P02358

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S7	MA [auth BG], OC [auth DG], RE [auth FG], TG [auth HG]	179	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P02359 (Escherichia coli (strain K12)) Explore P02359  Go to UniProtKB:  P02359

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S8	NA [auth BH], PC [auth DH], SE [auth FH], UG [auth HH]	130	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7W7 (Escherichia coli (strain K12)) Explore P0A7W7  Go to UniProtKB:  P0A7W7

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S9	OA [auth BI], QC [auth DI], TE [auth FI], VG [auth HI]	130	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7X3 (Escherichia coli (strain K12)) Explore P0A7X3  Go to UniProtKB:  P0A7X3

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S10	PA [auth BJ], RC [auth DJ], UE [auth FJ], WG [auth HJ]	103	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7R5 (Escherichia coli (strain K12)) Explore P0A7R5  Go to UniProtKB:  P0A7R5

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S11	QA [auth BK], SC [auth DK], VE [auth FK], XG [auth HK]	129	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7R9 (Escherichia coli (strain K12)) Explore P0A7R9  Go to UniProtKB:  P0A7R9

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S12	RA [auth BL], TC [auth DL], WE [auth FL], YG [auth HL]	124	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7S3 (Escherichia coli (strain K12)) Explore P0A7S3  Go to UniProtKB:  P0A7S3

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S13	SA [auth BM], UC [auth DM], XE [auth FM], ZG [auth HM]	118	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7S9 (Escherichia coli (strain K12)) Explore P0A7S9  Go to UniProtKB:  P0A7S9

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S14	AH [auth HN], TA [auth BN], VC [auth DN], YE [auth FN]	101	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AG59 (Escherichia coli (strain K12)) Explore P0AG59  Go to UniProtKB:  P0AG59

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S15	BH [auth HO], UA [auth BO], WC [auth DO], ZE [auth FO]	89	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0ADZ4 (Escherichia coli (strain K12)) Explore P0ADZ4  Go to UniProtKB:  P0ADZ4

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S16	AF [auth FP], CH [auth HP], VA [auth BP], XC [auth DP]	82	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7T3 (Escherichia coli (strain K12)) Explore P0A7T3  Go to UniProtKB:  P0A7T3

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17	BF [auth FQ], DH [auth HQ], WA [auth BQ], YC [auth DQ]	84	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0AG63 (Escherichia coli (strain K12)) Explore P0AG63  Go to UniProtKB:  P0AG63

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S18	CF [auth FR], EH [auth HR], XA [auth BR], ZC [auth DR]	75	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7T7 (Escherichia coli (strain K12)) Explore P0A7T7  Go to UniProtKB:  P0A7T7

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S19	AD [auth DS], DF [auth FS], FH [auth HS], YA [auth BS]	92	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7U3 (Escherichia coli (strain K12)) Explore P0A7U3  Go to UniProtKB:  P0A7U3

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S20	BD [auth DT], EF [auth FT], GH [auth HT], ZA [auth BT]	87	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P0A7U7 (Escherichia coli (strain K12)) Explore P0A7U7  Go to UniProtKB:  P0A7U7

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S21	AB [auth BU], CD [auth DU], FF [auth FU], HH [auth HU]	71	Escherichia coli K-12	Mutation(s): 0
UniProt
Find proteins for P68679 (Escherichia coli (strain K12)) Explore P68679  Go to UniProtKB:  P68679

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
elongation factor G	BB [auth BV], DD [auth DV], GF [auth FV], IH [auth HV]	704	Escherichia coli K-12	Mutation(s): 0  Gene Names: fusA EC: 3.6.5
UniProt
Find proteins for P0A6M8 (Escherichia coli (strain K12)) Explore P0A6M8  Go to UniProtKB:  P0A6M8

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Viomycin	CB [auth BW], ED [auth DW], HF [auth FW]	6	Streptomyces	Mutation(s): 0

Entity ID: 1
Molecule	Chains	Length	Organism	Image
23S rRNA	A [auth AA], DB [auth CA], FD [auth EA], IF [auth GA]	2,904	Escherichia coli K-12

Entity ID: 2
Molecule	Chains	Length	Organism	Image
5S rRNA	B [auth AB], EB [auth CB], GD [auth EB], JF [auth GB]	120	Escherichia coli K-12

Entity ID: 33
Molecule	Chains	Length	Organism	Image
16S rRNA	GA [auth BA], IC [auth DA], LE [auth FA], NG [auth HA]	1,542	Escherichia coli K-12

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GCP	BKA [auth HV], MO [auth BV], RV [auth DV], WCA [auth FV]	PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER C11 H18 N5 O13 P3 PHBDHXOBFUBCJD-KQYNXXCUSA-N
ZN	EBA [auth E4], JIA [auth G4], UM [auth A4], ZT [auth C4]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG	AAA [auth EA], ABA [auth EC], ACA [auth FA], ADA [auth GA], AEA [auth GA], AFA [auth GA], AGA [auth GA], AHA [auth GA], AI [auth AA], AIA [auth GA], AJ [auth AA], AJA [auth HA], AK [auth AA], AKA [auth HT], AL [auth AA], AM [auth AA], AN [auth BA], AO [auth BA], AP [auth CA], AQ [auth CA], AR [auth CA], AS [auth CA], AT [auth CA], AU [auth DA], AV [auth DA], AW [auth EA], AX [auth EA], AY [auth EA], AZ [auth EA], BAA [auth EA], BBA [auth ED], BCA [auth FA], BDA [auth GA], BEA [auth GA], BFA [auth GA], BGA [auth GA], BHA [auth GA], BI [auth AA], BIA [auth GA], BJ [auth AA], BJA [auth HA], BK [auth AA], BL [auth AA], BM [auth AA], BN [auth BA], BO [auth BA], BP [auth CA], BQ [auth CA], BR [auth CA], BS [auth CA], BT [auth CA], BU [auth DA], BV [auth DA], BW [auth EA], BX [auth EA], BY [auth EA], BZ [auth EA], CAA [auth EA], CBA [auth ED], CCA [auth FA], CDA [auth GA], CEA [auth GA], CFA [auth GA], CGA [auth GA], CHA [auth GA], CI [auth AA], CIA [auth GB], CJ [auth AA], CJA [auth HA], CK [auth AA], CKA [auth HV], CL [auth AA], CM [auth AA], CN [auth BA], CO [auth BA], CP [auth CA], CQ [auth CA], CR [auth CA], CS [auth CA], CT [auth CA], CU [auth DA], CV [auth DA], CW [auth EA], CX [auth EA], CY [auth EA], CZ [auth EA], DAA [auth EA], DBA [auth EQ], DCA [auth FA], DDA [auth GA], DEA [auth GA], DFA [auth GA], DGA [auth GA], DHA [auth GA], DI [auth AA], DIA [auth GB], DJ [auth AA], DJA [auth HA], DK [auth AA], DL [auth AA], DM [auth AA], DN [auth BA], DO [auth BA], DP [auth CA], DQ [auth CA], DR [auth CA], DS [auth CA], DT [auth CA], DU [auth DA], DV [auth DA], DW [auth EA], DX [auth EA], DY [auth EA], DZ [auth EA], EAA [auth EA], ECA [auth FA], EDA [auth GA], EEA [auth GA], EFA [auth GA], EGA [auth GA], EHA [auth GA], EI [auth AA], EIA [auth GB], EJ [auth AA], EJA [auth HA], EK [auth AA], EL [auth AA], EM [auth AA], EN [auth BA], EO [auth BA], EP [auth CA], EQ [auth CA], ER [auth CA], ES [auth CA], ET [auth CA], EU [auth DA], EV [auth DA], EW [auth EA], EX [auth EA], EY [auth EA], EZ [auth EA], FAA [auth EA], FBA [auth FA], FCA [auth FA], FDA [auth GA], FEA [auth GA], FFA [auth GA], FGA [auth GA], FHA [auth GA], FI [auth AA], FIA [auth GB], FJ [auth AA], FJA [auth HA], FK [auth AA], FL [auth AA], FM [auth AA], FN [auth BA], FO [auth BA], FP [auth CA], FQ [auth CA], FR [auth CA], FS [auth CA], FT [auth CA], FU [auth DA], FV [auth DA], FW [auth EA], FX [auth EA], FY [auth EA], FZ [auth EA], GAA [auth EA], GBA [auth FA], GCA [auth FA], GDA [auth GA], GEA [auth GA], GFA [auth GA], GGA [auth GA], GHA [auth GA], GI [auth AA], GIA [auth GC], GJ [auth AA], GJA [auth HA], GK [auth AA], GL [auth AA], GM [auth AA], GN [auth BA], GO [auth BA], GP [auth CA], GQ [auth CA], GR [auth CA], GS [auth CA], GT [auth CA], GU [auth DA], GV [auth DA], GW [auth EA], GX [auth EA], GY [auth EA], GZ [auth EA], HAA [auth EA], HBA [auth FA], HCA [auth FA], HDA [auth GA], HEA [auth GA], HFA [auth GA], HGA [auth GA], HHA [auth GA], HI [auth AA], HIA [auth GL], HJ [auth AA], HJA [auth HA], HK [auth AA], HL [auth AA], HM [auth AA], HN [auth BA], HO [auth BA], HP [auth CA], HQ [auth CA], HR [auth CA], HS [auth CA], HT [auth CA], HU [auth DA], HV [auth DA], HW [auth EA], HX [auth EA], HY [auth EA], HZ [auth EA], IAA [auth EA], IBA [auth FA], ICA [auth FA], IDA [auth GA], IEA [auth GA], IFA [auth GA], IGA [auth GA], IHA [auth GA], II [auth AA], IIA [auth GS], IJ [auth AA], IJA [auth HA], IK [auth AA], IL [auth AA], IM [auth AA], IN [auth BA], IO [auth BA], IP [auth CA], IQ [auth CA], IR [auth CA], IS [auth CA], IT [auth CA], IU [auth DA], IV [auth DA], IW [auth EA], IX [auth EA], IY [auth EA], IZ [auth EA], JAA [auth EA], JBA [auth FA], JCA [auth FA], JDA [auth GA], JEA [auth GA], JFA [auth GA], JGA [auth GA], JH [auth AA], JHA [auth GA], JI [auth AA], JJ [auth AA], JJA [auth HA], JK [auth AA], JL [auth AA], JM [auth AB], JN [auth BA], JO [auth BE], JP [auth CA], JQ [auth CA], JR [auth CA], JS [auth CA], JT [auth CA], JU [auth DA], JV [auth DA], JW [auth EA], JX [auth EA], JY [auth EA], JZ [auth EA], KAA [auth EA], KBA [auth FA], KCA [auth FA], KDA [auth GA], KEA [auth GA], KFA [auth GA], KGA [auth GA], KH [auth AA], KHA [auth GA], KI [auth AA], KIA [auth HA], KJ [auth AA], KJA [auth HA], KK [auth AA], KL [auth AA], KM [auth AB], KN [auth BA], KO [auth BL], KP [auth CA], KQ [auth CA], KR [auth CA], KS [auth CA], KT [auth CA], KU [auth DA], KV [auth DA], KW [auth EA], KX [auth EA], KY [auth EA], KZ [auth EA], LAA [auth EA], LBA [auth FA], LCA [auth FA], LDA [auth GA], LEA [auth GA], LFA [auth GA], LGA [auth GA], LH [auth AA], LHA [auth GA], LI [auth AA], LIA [auth HA], LJ [auth AA], LJA [auth HA], LK [auth AA], LL [auth AA], LM [auth AB], LN [auth BA], LO [auth BU], LP [auth CA], LQ [auth CA], LR [auth CA], LS [auth CA], LT [auth CA], LU [auth DA], LV [auth DA], LW [auth EA], LX [auth EA], LY [auth EA], LZ [auth EA], MAA [auth EA], MBA [auth FA], MCA [auth FA], MDA [auth GA], MEA [auth GA], MFA [auth GA], MGA [auth GA], MH [auth AA], MHA [auth GA], MI [auth AA], MIA [auth HA], MJ [auth AA], MJA [auth HA], MK [auth AA], ML [auth AA], MM [auth AB], MN [auth BA], MP [auth CA], MQ [auth CA], MR [auth CA], MS [auth CA], MT [auth CA], MU [auth DA], MV [auth DA], MW [auth EA], MX [auth EA], MY [auth EA], MZ [auth EA], NAA [auth EA], NBA [auth FA], NCA [auth FA], NDA [auth GA], NEA [auth GA], NFA [auth GA], NGA [auth GA], NH [auth AA], NHA [auth GA], NI [auth AA], NIA [auth HA], NJ [auth AA], NJA [auth HA], NK [auth AA], NL [auth AA], NM [auth AC], NN [auth BA], NO [auth BV], NP [auth CA], NQ [auth CA], NR [auth CA], NS [auth CA], NT [auth CA], NU [auth DA], NV [auth DA], NW [auth EA], NX [auth EA], NY [auth EA], NZ [auth EA], OAA [auth EA], OBA [auth FA], OCA [auth FA], ODA [auth GA], OEA [auth GA], OFA [auth GA], OGA [auth GA], OH [auth AA], OHA [auth GA], OI [auth AA], OIA [auth HA], OJ [auth AA], OJA [auth HA], OK [auth AA], OL [auth AA], OM [auth AC], ON [auth BA], OO [auth CA], OP [auth CA], OQ [auth CA], OR [auth CA], OS [auth CA], OT [auth CA], OU [auth DA], OV [auth DA], OW [auth EA], OX [auth EA], OY [auth EA], OZ [auth EA], PAA [auth EA], PBA [auth FA], PCA [auth FA], PDA [auth GA], PEA [auth GA], PFA [auth GA], PGA [auth GA], PH [auth AA], PHA [auth GA], PI [auth AA], PIA [auth HA], PJ [auth AA], PJA [auth HA], PK [auth AA], PL [auth AA], PM [auth AC], PN [auth BA], PO [auth CA], PP [auth CA], PQ [auth CA], PR [auth CA], PS [auth CA], PT [auth CA], PU [auth DA], PV [auth DA], PW [auth EA], PX [auth EA], PY [auth EA], PZ [auth EA], QAA [auth EA], QBA [auth FA], QCA [auth FA], QDA [auth GA], QEA [auth GA], QFA [auth GA], QGA [auth GA], QH [auth AA], QHA [auth GA], QI [auth AA], QIA [auth HA], QJ [auth AA], QJA [auth HA], QK [auth AA], QL [auth AA], QM [auth AD], QN [auth BA], QO [auth CA], QP [auth CA], QQ [auth CA], QR [auth CA], QS [auth CA], QT [auth CA], QU [auth DA], QV [auth DU], QW [auth EA], QX [auth EA], QY [auth EA], QZ [auth EA], RAA [auth EA], RBA [auth FA], RCA [auth FA], RDA [auth GA], REA [auth GA], RFA [auth GA], RGA [auth GA], RH [auth AA], RHA [auth GA], RI [auth AA], RIA [auth HA], RJ [auth AA], RJA [auth HA], RK [auth AA], RL [auth AA], RM [auth AE], RN [auth BA], RO [auth CA], RP [auth CA], RQ [auth CA], RR [auth CA], RS [auth CA], RT [auth CA], RU [auth DA], RW [auth EA], RX [auth EA], RY [auth EA], RZ [auth EA], SAA [auth EA], SBA [auth FA], SCA [auth FA], SDA [auth GA], SEA [auth GA], SFA [auth GA], SGA [auth GA], SH [auth AA], SHA [auth GA], SI [auth AA], SIA [auth HA], SJ [auth AA], SJA [auth HA], SK [auth AA], SL [auth AA], SM [auth AT], SN [auth BA], SO [auth CA], SP [auth CA], SQ [auth CA], SR [auth CA], SS [auth CA], ST [auth CB], SU [auth DA], SV [auth DV], SW [auth EA], SX [auth EA], SY [auth EA], SZ [auth EA], TAA [auth EA], TBA [auth FA], TCA [auth FA], TDA [auth GA], TEA [auth GA], TFA [auth GA], TGA [auth GA], TH [auth AA], THA [auth GA], TI [auth AA], TIA [auth HA], TJ [auth AA], TJA [auth HA], TK [auth AA], TL [auth AA], TM [auth A3], TN [auth BA], TO [auth CA], TP [auth CA], TQ [auth CA], TR [auth CA], TS [auth CA], TT [auth CB], TU [auth DA], TV [auth EA], TW [auth EA], TX [auth EA], TY [auth EA], TZ [auth EA], UAA [auth EA], UBA [auth FA], UCA [auth FE], UDA [auth GA], UEA [auth GA], UFA [auth GA], UGA [auth GA], UH [auth AA], UHA [auth GA], UI [auth AA], UIA [auth HA], UJ [auth AA], UJA [auth HA], UK [auth AA], UL [auth AA], UN [auth BA], UO [auth CA], UP [auth CA], UQ [auth CA], UR [auth CA], US [auth CA], UT [auth CB], UU [auth DA], UV [auth EA], UW [auth EA], UX [auth EA], UY [auth EA], UZ [auth EA], VAA [auth EA], VBA [auth FA], VCA [auth FU], VDA [auth GA], VEA [auth GA], VFA [auth GA], VGA [auth GA], VH [auth AA], VHA [auth GA], VI [auth AA], VIA [auth HA], VJ [auth AA], VJA [auth HA], VK [auth AA], VL [auth AA], VM [auth BA], VN [auth BA], VO [auth CA], VP [auth CA], VQ [auth CA], VR [auth CA], VS [auth CA], VT [auth CB], VU [auth DA], VV [auth EA], VW [auth EA], VX [auth EA], VY [auth EA], VZ [auth EA], WAA [auth EB], WBA [auth FA], WDA [auth GA], WEA [auth GA], WFA [auth GA], WGA [auth GA], WH [auth AA], WHA [auth GA], WI [auth AA], WIA [auth HA], WJ [auth AA], WJA [auth HA], WK [auth AA], WL [auth AA], WM [auth BA], WN [auth BA], WO [auth CA], WP [auth CA], WQ [auth CA], WR [auth CA], WS [auth CA], WT [auth CD], WU [auth DA], WV [auth EA], WW [auth EA], WX [auth EA], WY [auth EA], WZ [auth EA], XAA [auth EB], XBA [auth FA], XCA [auth FV], XDA [auth GA], XEA [auth GA], XFA [auth GA], XGA [auth GA], XH [auth AA], XHA [auth GA], XI [auth AA], XIA [auth HA], XJ [auth AA], XJA [auth HA], XK [auth AA], XL [auth AA], XM [auth BA], XN [auth BA], XO [auth CA], XP [auth CA], XQ [auth CA], XR [auth CA], XS [auth CA], XT [auth CE], XU [auth DA], XV [auth EA], XW [auth EA], XX [auth EA], XY [auth EA], XZ [auth EA], YAA [auth EB], YBA [auth FA], YCA [auth GA], YDA [auth GA], YEA [auth GA], YFA [auth GA], YGA [auth GA], YH [auth AA], YHA [auth GA], YI [auth AA], YIA [auth HA], YJ [auth AA], YJA [auth HC], YK [auth AA], YL [auth AA], YM [auth BA], YN [auth BA], YO [auth CA], YP [auth CA], YQ [auth CA], YR [auth CA], YS [auth CA], YT [auth C4], YU [auth DA], YV [auth EA], YW [auth EA], YX [auth EA], YY [auth EA], YZ [auth EA], ZAA [auth EB], ZBA [auth FA], ZCA [auth GA], ZDA [auth GA], ZEA [auth GA], ZFA [auth GA], ZGA [auth GA], ZH [auth AA], ZHA [auth GA], ZI [auth AA], ZIA [auth HA], ZJ [auth AA], ZJA [auth HE], ZK [auth AA], ZL [auth AA], ZM [auth BA], ZN [auth BA], ZO [auth CA], ZP [auth CA], ZQ [auth CA], ZR [auth CA], ZS [auth CA], ZU [auth DA], ZV [auth EA], ZW [auth EA], ZX [auth EA], ZY [auth EA], ZZ [auth EA]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
5OH	CB [auth BW], ED [auth DW], HF [auth FW]	L-PEPTIDE LINKING	C6 H12 N4 O3		ALA
DPP	CB [auth BW], ED [auth DW], HF [auth FW]	L-PEPTIDE LINKING	C3 H8 N2 O2		ALA
KBE	CB [auth BW], ED [auth DW], HF [auth FW]	L-PEPTIDE LINKING	C6 H14 N2 O2		LYS

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 55
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_000226	CB [auth BW], ED [auth DW], HF [auth FW]	Viomycin	Oligopeptide / Antibiotic

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.267 
• R-Value Work: 0.215 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 361.14	α = 90
b = 360.51	β = 103.217
c = 429.73	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-07-09 
Deposition Author(s): Pulk, A., Cate, J.H.D.
• This entry supersedes: 4KJ5, 4KJ6, 4KJ7, 4KJ8, 4KJ9, 4KJA, 4KJB, 4KJC

Revision History  

• Version 1.0: 2014-07-09
  Type: Initial release
  
• Version 1.1: 2014-12-10
  Changes: Other
• Version 1.2: 2014-12-17
  Changes: Source and taxonomy, Structure summary