PRD_000226

Viomycin

Created:	2012-02-08
Last modified:	2023-09-20

PRD_000226 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 3KNJ.

Find Related PDB Entries
25 entries where PRD_000226 is present

Chemical Details
Formal Charge	0
Atom Count	91
Chiral Atom Count	7
Bond Count	92
Aromatic Bond Count	0

2D diagram of PRD_000226

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Chemical Component Summary
Name	Viomycin
Systematic Name (OpenEye OEToolkits)	(3S)-N-[(3S,6Z,9S,12S,15S)-6-[(aminocarbonylamino)methylidene]-3-[(4S,6S)-2-azanyl-4-oxidanyl-1,4,5,6-tetrahydropyrimidin-6-yl]-9,12-bis(hydroxymethyl)-2,5,8,11,14-pentakis(oxidanylidene)-1,4,7,10,13-pentazacyclohexadec-15-yl]-3,6-bis(azanyl)hexanamide
Formula	C₂₅ H₄₃ N₁₃ O₁₀
Molecular Weight	685.69
Type	PEPTIDE-LIKE

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=C1NC(C(=O)NC(\C(=O)NC(C(=O)NCC(NC(=O)CC(N)CCCN)C(=O)NC1CO)C2NC(=NC(O)C2)N)=C\NC(=O)N)CO
SMILES	CACTVS	3.370	NCCC[CH](N)CC(=O)N[CH]1CNC(=O)[CH](NC(=O)C(NC(=O)[CH](CO)NC(=O)[CH](CO)NC1=O)=CNC(N)=O)[CH]2C[CH](O)N=C(N)N2
SMILES	OpenEye OEToolkits	1.7.6	C1C(NC(=NC1O)N)C2C(=O)NCC(C(=O)NC(C(=O)NC(C(=O)NC(=CNC(=O)N)C(=O)N2)CO)CO)NC(=O)CC(CCCN)N
Canonical SMILES	CACTVS	3.370	NCCC[C@H](N)CC(=O)N[C@H]1CNC(=O)[C@@H](NC(=O)\C(NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC1=O)=C\NC(N)=O)[C@H]2C[C@H](O)N=C(N)N2
Canonical SMILES	OpenEye OEToolkits	1.7.6	C1[C@H](NC(=N[C@H]1O)N)[C@H]2C(=O)NC[C@@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N/C(=C\NC(=O)N)/C(=O)N2)CO)CO)NC(=O)C[C@H](CCCN)N
InChI	InChI	1.03	InChI=1S/C25H43N13O10/c26-3-1-2-10(27)4-16(41)32-12-6-30-23(47)18(11-5-17(42)37-24(28)36-11)38-20(44)13(7-31-25(29)48)33-21(45)14(8-39)35-22(46)15(9-40)34-19(12)43/h7,10-12,14-15,17-18,39-40,42H,1-6,8-9,26-27H2,(H,30,47)(H,32,41)(H,33,45)(H,34,43)(H,35,46)(H,38,44)(H3,28,36,37)(H3,29,31,48)
InChIKey	InChI	1.03	GXFAIFRPOKBQRV-UHFFFAOYSA-N

Related Resource References

Resource Name	Reference
PubChem	3037981, 135398671
ChEMBL	CHEMBL3085436
ChEBI	CHEBI:94788, CHEBI:15782

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.