4TYZ | pdb_00004tyz

Crystal structure of the C-terminal domain of an unknown protein from Leishmania infantum

• PDB DOI: https://doi.org/10.2210/pdb4TYZ/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Leishmania infantum
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-07-09 Released: 2014-08-06 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.186 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.159 (Depositor), 0.163 (DCC) 
• R-Value Observed: 
  0.160 (Depositor) 

Literature

Crystal structure of the C-terminal domain of an unknown protein from Leishmania infantum

Fischer, E., Dranow, D.M., Abendroth, J., Lorimer, D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 25.4 kDa 
• Atom Count: 2,123 
• Modeled Residue Count: 218 
• Deposited Residue Count: 220 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	110	Leishmania infantum	Mutation(s): 0  Gene Names: LINJ_30_2720
UniProt
Find proteins for A4I5U9 (Leishmania infantum) Explore A4I5U9  Go to UniProtKB:  A4I5U9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	C [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.186 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.159 (Depositor), 0.163 (DCC) 
• R-Value Observed: 0.160 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M34TYZ

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.86	α = 90
b = 58.86	β = 90
c = 135.12	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
XSCALE	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
ARP	model building
PHENIX	refinement
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-08-06 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2014-08-06
  Type: Initial release
  
• Version 1.1: 2014-10-22
  Changes: Database references
• Version 1.2: 2015-02-04
  Changes: Derived calculations
• Version 1.3: 2017-11-22
  Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy
• Version 1.4: 2023-12-27
  Changes: Data collection, Database references, Refinement description