☰ Navigation Tabs
Crystal structure of the C-terminal domain of an unknown protein from Leishmania infantum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 290 Reagents JCSG+ sceen b3: 20% PEG 6000, 100mM Bicine pH 9.0; LeinA.18749.a.B1.PS02018 at 8.28mg/ml 2 VAPOR DIFFUSION, SITTING DROP 7.5 290 RigakuReagents JCSG+ sceen a9: 20% PEG 3350, 200mM Ammonium chloride; LeinA.18749.a.B1.PS02018 at 8.28mg/ml; the crystal was soaked for 10sec each in reservoir solution with 10% EG/500mM NaI, 20% EG/1000mM NaI, this sample was used for in-house phasing
Crystal Properties Matthews coefficient Solvent content 2.68 54 2.68 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.86 α = 90 b = 58.86 β = 90 c = 135.12 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2014-06-13 M SINGLE WAVELENGTH 2 2 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F 2 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.4 0.048 0.048 0.052 30.88 7.3 36702 36500 -3 13.71
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 100 0.522 0.562 3.73 7.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.6 33.752 1.36 36479 1909 99.57 0.16 0.1585 0.1625 0.1862 0.1895 Random selection 19.8652
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.559 f_angle_d 1.022 f_chiral_restr 0.042 f_bond_d 0.007 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1743 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 4
Software Software Software Name Purpose XDS data scaling XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction ARP model building PHENIX refinement CNS refinement